Table 2.
Fraction of molecules that are fingerprint analogues to DRD2 active molecules and respective fraction of DRD2 active molecules with analogues
Origin of dataset | Fraction of molecules that are analogues to DRD2 actives | Fraction of DRD2 actives with analogues | ||
---|---|---|---|---|
DRD2 chemical space relative to training data | In | All | In | All |
Inactive (in) | 0.020 | 0.089 | 0.197 | 0.116 |
Inactive (all) | 0.025 | 0.102 | 0.242 | 0.116 |
Train | 0.020 | 0.071 | 0.225 | 0.109 |
Random | 0.024 | 0.075 | 0.313 | 0.120 |
Prior | 0.021 | 0.071 | 0.220 | 0.110 |
Glide-Agent | 0.051 | 0.124 | 0.268 | 0.105 |
SVM-Agent | 0.179 | 0.563 | 0.237 | 0.102 |
The SVM-Agent generates more analogues to known actives, however, the Glide-Agent generates analogues to more known actives, demonstrating a greater coverage of known active space