Table 1.
The number of up‐ and down‐regulated DEGs at different time points after inoculation
| Paired samples | 0hpi (T0) | 0.5hpi (T1) | 1.5hpi (T2) | 3hpi (T3) | 6hpi (T4) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Up | Down | Up | Down | Up | Down | Up | Down | Up | Down | |
| R vs RC | 207 | 188 | 99 | 130 | 377 | 157 | 197 | 192 | 503 | 296 |
| S vs SC | 145 | 155 | 91 | 240 | 306 | 428 | 1243 | 86 | 838 | 1225 |
| RC vs SC | 3350 | 2341 | 2873 | 2650 | 4416 | 1963 | 4970 | 1772 | 3059 | 2615 |
| R vs S | 3206 | 2371 | 3005 | 2624 | 5075 | 1865 | 3438 | 2346 | 4001 | 2392 |
R and RC The resistant line AF99 was challenged with pathogen (R) or treated with water (RC), S and SC The susceptible line AF32 was challenged with pathogen (S) or treated with water (SC), hpi Hours post inoculation