Table 1.
Classification of transcriptome
Transcriptome Study/Year | Properties | Classifications | References | ||||
---|---|---|---|---|---|---|---|
Collisson et al. 2012 | Classical Type | Quasi-Mesenchymal type | Exocrine type | [35] | |||
Biomarkers |
GATA6 KRAS |
Low or no expression of GATA6 | ELA3A/ CFTR | ||||
Pharmacologically sensitive |
Gemcitabine (low) Erlotinib (high) |
Gemcitabine (high) | |||||
Prediction | Better survival | Worse overall survival | |||||
Moffitt et al 2015 |
Stroma related | Tumor related | [31] | ||||
Normal | Activated | Classical | Basal | ||||
Biomarkers | ACTA2, DES, VIM | ITGAM, CCL13, CCL18, FAP, SPARC, WNT2, MMP9, MMP11, WNT5a | GATA6 | No expression of GATA6 | |||
Prediction | Good | Worst | Best | Worst | |||
Pharmacologically sensitive |
5-FU (high) Gemcitabine (low) |
5-FU (low) | |||||
Bailey et al | Squamous subtype | Pancreatic progenitor | ADEX | Immunogenic | [32] | ||
Biomarkers | GATA6 ↓and TP63↑ | PDX1, FOXA2, FOXA3 | MIST1, NR5A2 | Immune cells (CD4+, CD8+), Check points (CTLA4, PD1) | |||
Predictive | Poor | Good | Good | Good | |||
Puleo et al | Pure basal like | Pure/ immune classic | Stroma activated | Desmoplastic | [33] | ||
Biomarkers | GATA6↓, CDKN2A/ TP53 | GATA ↑, CTLA4, immune cells (T & B cells) | α-SMA, FAP, SPARC | Stromal components | |||
Predictive | Poor | Good | Average | Average | |||
Chang-seng-Yue et al | Classical | Basal | Hybrid | [34] | |||
Biomarkers | GATA4 ↑, GATA6↑ | GATA6↓ | GATA6 ↓↑ | ||||
Pharmacologically sensitive |
Gemcitabine(low) mFOLFIRINOX (high) |
mFOLFIRINOX (low) gemcitabine (high) |
|||||
Prediction | Good | Poor | Average |