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. 2021 Feb 18;476(6):2429–2437. doi: 10.1007/s11010-021-04095-4

Table 1.

Classification of transcriptome

Transcriptome Study/Year Properties Classifications References
Collisson et al. 2012 Classical Type Quasi-Mesenchymal type Exocrine type [35]
Biomarkers

GATA6

KRAS

Low or no expression of GATA6 ELA3A/ CFTR
Pharmacologically sensitive

Gemcitabine (low)

Erlotinib (high)

Gemcitabine (high)
Prediction Better survival Worse overall survival

Moffitt et al

2015

Stroma related Tumor related [31]
Normal Activated Classical Basal
Biomarkers ACTA2, DES, VIM ITGAM, CCL13, CCL18, FAP, SPARC, WNT2, MMP9, MMP11, WNT5a GATA6 No expression of GATA6
Prediction Good Worst Best Worst
Pharmacologically sensitive

5-FU (high)

Gemcitabine (low)

5-FU (low)
Bailey et al Squamous subtype Pancreatic progenitor ADEX Immunogenic [32]
Biomarkers GATA6 ↓and TP63↑ PDX1, FOXA2, FOXA3 MIST1, NR5A2 Immune cells (CD4+, CD8+), Check points (CTLA4, PD1)
Predictive Poor Good Good Good
Puleo et al Pure basal like Pure/ immune classic Stroma activated Desmoplastic [33]
Biomarkers GATA6↓, CDKN2A/ TP53 GATA ↑, CTLA4, immune cells (T & B cells) α-SMA, FAP, SPARC Stromal components
Predictive Poor Good Average Average
Chang-seng-Yue et al Classical Basal Hybrid [34]
Biomarkers GATA4 ↑, GATA6↑ GATA6↓ GATA6 ↓↑
Pharmacologically sensitive

Gemcitabine(low)

mFOLFIRINOX (high)

mFOLFIRINOX (low)

gemcitabine (high)

Prediction Good Poor Average