Table 1.
Whitefly datasets used in this study derived from public database, lab cultures, and field investigation.
| Library | BioProject accession | Run accession number | Cryptic species ideification | University/Institute | Location | Brief description | Total base (Gb) | N50 |
|---|---|---|---|---|---|---|---|---|
| ZJU-B1 | PRJNA407873 | SRR6117406 | MEAM1 | Zhejiang University | Hangzhou, China | Healthy whitefly (gut) | 7.7 | 2690 |
| ZJU-B2 | SRR6117407 | MEAM1 | TYLCV infected whitefly (gut) | 7.7 | 2844 | |||
| ZJU-B3 | PRJNA282153 | SRR2001504 | MEAM1 | Whitefly nymph | 4.7 | 1076 | ||
| ZJU-B4 | PRJNA255986 | SRR1523522 | MEAM1 | Whitefly adult | 4.7 | 1462 | ||
| ZJU-Q1 | PRJNA79601 | SRR1104130 | MED | Whitefly adult | 10.4 | 2009 | ||
| ZJU-Q2 | PRJNA338731 | SRR4039449 | MED | Whitefly fed on cotton and tobacco | 18.6 | 1111 | ||
| CAAS-B1 | PRJNA298415 | SRR4293755 | MEAM1 | Chinese Academy of Agricultural Sciences | Beijing, China | Whitefly egg | 7.1 | 2942 |
| CAAS-B2 | SRR4293724 | MEAM1 | Whitefly male adult | 4.1 | 1557 | |||
| CAAS-B3 | SRR4293725 | MEAM1 | Whitefly female adult | 5.1 | 2142 | |||
| CAAS-Q1 | SRR4293748 | MED | Whitefly male adult | 5.6 | 1474 | |||
| CAAS-Q2 | SRR2619082 | MED | Unknown | 5.6 | 1475 | |||
| CAAS-BQ | SRR4293752 | MEAM1 and MED | Whitefly female adult | 5.5 | 1779 | |||
| CAAS-B4 | PRJEB17859 | ERR1726444 | MEAM1 | Imidacloprid treatment | 6.3 | 2508 | ||
| CAAS-Q3 | ERR1726458 | MED | Imidacloprid treatment | 5.5 | 3085 | |||
| CAAS-B5 | PRJNA344376 | SRR4426118 | MEAM1 | Whitefly fed on cotton | 6.2 | 648 | ||
| CAAS-Q4 | SRR4426099 | MED | Whitefly fed on cotton | 5.5 | 2308 | |||
| CAAS-B6 | PRJNA89143 | SRR453543 | MEAM1 | Different plant host and whitefly sex strains | 5.2 | 1114 | ||
| CAAS-Q5 | PRJNA276952 | SRR2895294 | MED | Sexual differences of whitefly | 4.1 | 1166 | ||
| CAAS-B7 | PRJNA391229 | SRR5723126 | MEAM1 | Whitefly antenna | 5.0 | 1186 | ||
| CAU-Q1 | PRJNA417353 | SRR6262725 | MED | China Agricultural University | Beijing, China | Wolbachia related study | 8.3 | 1128 |
| CAS-Q1 | PRJNA606896 | SRR11092386 | MED | Chinese Academy of Sciences | Beijing, China | Whitefly head | 6.2 | 2083 |
| QAU-BQ | PRJNA490883 | SRR7829909 | MEAM1 and MED | Qingdao Agricultural University | Qingdao, China | Whiteflies co-infected by TYLCV and ToCV | 5.2 | 2055 |
| QAU-Q1 | PRJNA279224 | SRR1930109 | MED | Interaction between whitefly and plant hosts | 5.0 | 2141 | ||
| NIAS-Q1 | PRJDB2008 | DRR018506 | MED | National Institute of Agrobiological Sciences | Tsukuba, Japan | Study of mitochondrial transporters | 3.4 | 2430 |
| NABI-A1 | PRJNA237273 | SRR1159208 | AsiaII7 | National Agri-Food Biotechnology Institute | Ajitgarh, India | Comprehensive transcriptome analysis | 8.5 | 2237 |
| UE-Q1 | PRJEB13160 | ERR1337902, ERR1337901, ERR1337900 | MED | University of Exeter | Penryn, UK | Study of insecticide resistance | 11.4 | 2851 |
| UC-Q1 | PRJNA293094 | SRR2174325 | MED | University of Crete | Heraklion, Greece | Study of insecticide resistance | 7.8 | 1877 |
| CU-B1 | PRJNA312467 | SRR3179979 | MEAM1 | Cornell University | New York, USA | Fed on tomato | 4.2 | 1339 |
| CU-S1 | PRJNA419386 | SRR6313815 | SSA1 | Whitefly adults | 7.4 | 597 | ||
| HU-Q1 | PRJNA427517 | SRR6432772 | MED—France | The Hebrew University | Jerusalem, Israel | Differential expression in whitefly species | 2.2 | 1036 |
| HU-Q2 | SRR6432775 | MED—France | 2.1 | 989 | ||||
| HU-Q3 | SRR6432776 | MED—France | 2.0 | 878 | ||||
| HU-S1 | SRR6432785 | SSA—Tanzania | 2.2 | 1560 | ||||
| HU-S2 | SRR6432829 | SSA1—Tanzania | 2.1 | 853 | ||||
| HU-S3 | SRR6432827 | SSA1—Tanzania | 2.1 | 846 | ||||
| HU-A1 | SRR6432767 | AsiaII1 | 2.1 | 667 | ||||
| HU-A2 | SRR6432762 | AsiaII1 | 2.1 | 1088 | ||||
| HU-A3 | SRR6432768 | AsiaII1 | 2.1 | 736 | ||||
| HU-N1 | SRR6432809 | NW1—Brazil | 2.3 | 1367 | ||||
| HU-N2 | SRR6432804 | NW1—Brazil | 2.0 | 1152 | ||||
| HU-N3 | SRR6432800 | NW1—Brzil | 1.9 | 1425 | ||||
| NBU-B | PRJNA677841 | SRR13050950 | MEAM1 | Ningbo University | Ningbo, China | Lab culture of this study | 14 | 2902 |
| NBU-Q | SRR13052369 | MED | 15 | 3385 | ||||
| FY-Q | SRR13039280 | MED | Fuyang, China | Field investigation | 13 | 2676 |
MEAM1 Middle East Asia Minor 1, MED Mediterranean, SSA1 sub-Saharan Africa 1, NW1 New World 1.