Table 3.
Set name | SNP | LKMRa p-value |
Beta | SE | CIc (lower, upper) | OR b | Max (T)d p-value |
|
---|---|---|---|---|---|---|---|---|
S1 | rs11216126 | < 0.0001 | − 0.062 | 0.05284 | − 0.1659 | 0.04124 | 0.9 | 0.2382 |
rs11556024 | − 0.067 | 0.0846 | − 0.2329 | 0.09873 | 0.9 | 0.4278 | ||
rs11216129 | − 0.057 | 0.05328 | − 0.1616 | 0.04726 | 0.9 | 0.2833 | ||
rs12292921 | 0.2862 | 0.07402 | 0.1411 | 0.4313 | 1.3 | 0.0001 | ||
rs180326 | 0.1293 | 0.0387 | 0.05347 | 0.2052 | 1.1 | 0.0008 | ||
S2 | rs2075295 | 0.938 | − 0.003 | 0.0399 | − 0.08132 | 0.07511 | 0.9 | 0.93 |
S3 | rs17519079 | < 0.0001 | − 0.057 | 0.0894 | − 0.2319 | 0.1185 | 0.9 | 0.52 |
rs4938310 | − 0.133 | 0.04784 | − 0.2263 | − 0.03876 | 0.8 | 0.005 | ||
rs3741301 | − 0.056 | 0.04173 | − 0.1374 | 0.0262 | 0.9 | 0.18 | ||
rs918144 | 0.0974 | 0.0381 | 0.0227 | 0.1721 | 1.1 | 0.01 | ||
rs10488698 | − 0.119 | 0.07948 | − 0.2751 | 0.0365 | 0.8 | 0.13 | ||
rs623908 | − 0.042 | 0.03834 | − 0.1176 | 0.03275 | 0.9 | 0.26 | ||
rs17120029 | 0.245 | 0.07447 | 0.09909 | 0.391 | 1.2 | 0.0009 | ||
rs1942478 | − 0.105 | 0.05997 | − 0.2225 | 0.01254 | 0.9 | 0.07 | ||
rs2075294 | − 0.098 | 0.08 | − 0.255 | 0.05858 | 0.9 | 0.21 | ||
rs2266788 | 0.2609 | 0.05131 | 0.1604 | 0.3615 | 1.3 | 3.663E − 07 | ||
rs619054 | − 0.097 | 0.04493 | − 0.1854 | − 0.009276 | 0.9 | 0.03 | ||
rs651821 | 0.2773 | 0.05403 | 0.1714 | 0.3832 | 1.3 | 2.867E − 07 |
aLogistic Kernel machine regression.
bOdd ratio for minor allele.
c95% Confidence interval for BETA.
dMAX(T) p-value with 1,000,000 replications.