Table 2.
Predicted consequential pairing of target region in the transcript and miR-424-5p
Target gene | Representative transcript | Gene name | Transcript position | Predicted consequential pairing of target region Transcript (top) and miRNA (bottom) | Site type |
---|---|---|---|---|---|
CCND1 | ENST00000227507.2 | Cyclin D1 | 1961–1967 3′UTR |
(Transcript) 5′ CCAUUUUCUUAUUGCGCUGCUAC 3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
7mer-A1 |
2033–2040 3′UTR |
(Transcript) 5′ CUCUUUCACAUUGUUUGCUGCUA 3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
8mer | |||
VEGFA | ENST00000372067.3 | Vascular endothelial growth factor A | 276–283 3′UTR |
(Transcript) 5′CCAUUUUAUUUUUCUUGCUGCUA 3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
8mer |
CD40 | ENSG00000101017 | CD40, TNF receptor superfamily member 5 |
61–71 3′UTR |
(Transcript) 5′ CUUCCUGGCUCCAACACUGCUGCUC 3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
7mer |
COX2 | ENSG00000073756 (PTGS2) | Cyclooxygenase-2 |
165–179 3′UTR |
(Transcript) 5′ UGAUUUGUUAUUAACAUUGAUCGCUG 3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
6mer |
INSR | ENSG00000171105 | Insulin receptor |
4218–4241 3′UTR |
Transcript) 5′UCCUCAAAUUGACCAAUAGCUGCUGC 3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
7mer |
3844–3871 3′UTR |
(Transcript) 5′UCAUCAUGAUCACUGAUUACUUGCUGCUC3′ (miRNA) 3′ AAGUUUUGUACUUAACGACGAC 5′ |
8mer |
TargetScan Human, release 7.1 (www.targetscan.org) and Diana-TarBase v8 (http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=tarbasev8%2Findex) databases were used to predict the interaction sites between the transcripts and miR-424-5p