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. 2021 Apr 9;10:e62278. doi: 10.7554/eLife.62278

Appendix 1—table 16. Outcome and covariate descriptions, coding, and % missing.

Baseline, n = 987 12 month, n = 939 24 month, n = 1001
% missing % missing % missing Variable description Data source
Outcome Data
Enteric infection outcome data available 24 14 8.0 Binary; 0/1 Based on collection of stool material and successful analysis by GPP
STH infection outcome data available 30 37 46 Binary; 0/1 Based on collection of stool material and successful analysis by Kato-Katz
Caregiver-reported diarrhea, 7-day recall 1.3 7.8 20 Binary; 0/1 Child Survey
Covariate data
Child sex, female 2.3 1.3 7.0 Binary; 0=male, 1=female Child Survey
Respondent is child's mother 2.5 7.6 20 Binary; 0/1 Child Survey
Caregiver completed primary school 0.8 1.7 6.7 Binary; 0/1 Child Survey
Child breast feeds with or without complementary feeding 1.3 7.7 20 Binary; 0/1 Child Survey
Child exclusively breastfeeds 1.3 7.7 20 Binary; 0/1 Child Survey
Child wears a diaper 1.4 7.6 20 Binary; 0/1 Child Survey
Child feces is disposed of in a latrine 1.3 7.1 20 Binary; 0/1 Created from survey questions in Child Survey
Child age at sampling, days 23 16 17 Integer Created from birthdate (Child Survey) and date of sampling
Child age at survey, days 2.6 7.5 19 Integer Created from birthdate (Child Survey) and date of Survey
30-day cumulative rainfall at sampling 21 14 10 Continuous Created from sample date and data from data from the National Oceanic and Atmospheric Administration’s National Centers for Environmental Information (https://www.ncdc.noaa. gov/cdo-web/datatools/findstation)
30-day cumulative rainfall at survey 1.3 7.1 19 Continuous Created from survey date and data from data from the National Oceanic and Atmospheric Administration’s National Centers for Environmental Information (https://www.ncdc.noaa. gov/cdo-web/datatools/findstation)
Sample collection during rainy season 21 14 10 Binary; 0/1 Created from sample date. Rainy season defined as November – April.
Survey collection during rainy season 1.3 7.1 19 Binary; 0/1 Created from survey date. Rainy season defined as November – April.
Household crowding, >3 persons/room 0.4 0.3 2.7 Binary; 0/1 Created from questions in Household Survey
Household floor is covered 0.4 0.3 2.7 Binary; 0/1 Observation
Household walls made of concrete, bricks or similar 0.4 0.3 2.7 Binary; 0/1 Observation
Household population 0.3 0.3 1.6 Integer Household survey
Number of rooms in household 0.4 0.3 2.3 Integer Created from questions in Household Survey
Wealth score, 0 (poorest) - 1 (wealthiest), unitless 0.4 0.3 2.7 Continuous Created from questions in Household Survey using Simple Poverty Scorecard for Mozambique (http://www.simplepovertyscorecard.com/MOZ_2008_ENG.pdf). Questions referencing latrine removed from 12 month and 24 month score. All scores normalized by total number of points available.
Household uses tap in compound as primary drinking water source 1.7 1.0 2.0 Binary 0/1 Created from drinking water source question in Household Survey
Latrine has drop-hole cover 1.9 0.0 0.0 Binary; 0/1 Observation
Latrine has a ventpipe 1.8 0.0 0.0 Binary; 0/1 Observation
Latrine has a ceramic, tile, or concrete pedestal or slab 2.2 0.1 0.1 Binary; 0/1 Observation
Latrine has sturdy walls made of concrete, bricks, or similar 1.9 0.0 0.0 Binary; 0/1 Observation
Compound population 0.0 0.0 0.0 Integer Compound Survey, enrollment checklists
Number of households in compound 0.0 0.0 0.0 Integer Compound Survey, enrollment checklists
Number of latrines present in the compound 0.1 0.0 0.0 Integer Compound Survey
Persons per latrine 1.8 0.1 0.3 Continuous Created by dividing the compound population by the number of latrines/drop-holes
Households per latrine 1.8 0.1 0.3 Continuous Created by dividing the number of households in the compound by the number of latrines in the compound
Number of water taps present in the compound 1.1 0.0 0.0 Integer Compound Survey
Standing water visible around compound grounds 1.9 0.3 0.0 Binary; 0/1 Observation
Standing or leaking wastewater visible around compound grounds 1.9 0.3 0.0 Binary; 0/1 Observation
Faeces or used diapers observed around compound grounds or in solid waste 1.9 0.3 0.0 Binary; 0/1 Observation
Compound floods when it rains 0.0 0.0 0.0 Binary; 0/1 Compound Survey
Compound has electricity that normally functions 0.0 0.0 0.0 Binary; 0/1 Compound Survey
Compound-level population density 2.2 1.5 1.5 Continuous, persons/m2 Created by dividing the population of the compound by the measured area of the compound
Any animal present in the compound 0.0 0.4 0.0 Binary; 0/1 Observation
Dog(s) present in the compound 0.0 0.4 0.0 Binary; 0/1 Observation
Chicken(s) and/or duck(s) present in the compound 0.0 0.4 0.0 Binary; 0/1 Observation
Cat(s) present in the compound 0.0 0.4 0.0 Binary; 0/1 Observation
Any other animal(s) present in the compound 0.0 0.4 0.0 Binary; 0/1 Observation