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. 2021 May 14;11:10358. doi: 10.1038/s41598-021-89683-6

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Recombination profile of the core genome alignment of 490 C. jejuni isolates calculated by BRATNextGen and visualized in Phandango. The left side shows the core genome phylogeny. The metadata provide information about lifestyle preferences (association) and BAPS clusters. Significant recombinations are marked by coloured dots and lines. Purple and yellow boxes highlight cattle- and pig-associated BAPS clusters, respectively. Presence of dot of the same colour across multiple isolates within a column represents acquisition of the same recombinant segment, otherwise colours are arbitrary. The line graph at the bottom presents recombination prevalence along the genome sequence.