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. 2021 May 14;11:10321. doi: 10.1038/s41598-021-89070-1

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Phylogenetic analysis of dengue virus genomes from Senegal. (A) Map showing the locations of DENV cases identified in this study by virus serotype the size of the dot is proportional to the number of samples. Major cities, including Thiès—the sampling site—and Touba—the location of the Magal—are also shown. This map was created using QGIS v3.4.7 (http://www.qgis.osgeo.org). (B) DENV3 maximum likelihood (ML) phylogeny: genomes from Thiès are in genotype III and are most similar to genomes from Africa. (C) DENV2 ML phylogeny: genomes from Thiès are in the Cosmopolitan genotype and are most similar to other West African genomes. (D) DENV1 ML phylogeny: genomes from Thiès are in genotype III and are most similar to genomes from West Africa. Bootstrap values for key nodes are shown.