Table 4.
Characteristics and models selected in ML and BI phylogenetic analyses with different subsets of data
| Datasets | Number of taxa | Number of sites | Number of variable/Parsimony informative sites | Best fit Model | Model in ML | Model in BI |
|---|---|---|---|---|---|---|
| Whole plastid genomes | 95 | 130,398 | 57,674/38001 | GTR + I + G | GTR + G | GTR + I + G |
| Coding | 95 | 71,672 | 28,966/19612 | GTR + I + G | GTR + G | GTR + I + G |
| Non-coding | 95 | 107,087 | 52,927/34467 | GTR + I + G | GTR + G | GTR + I + G |
| IRb | 95 | 66,767 | 24,634/10015 | TVM + G | GTR + G | TVM + G |
| LSC | 95 | 181,032 | 90,119/49802 | TVM + I + G | GTR + G | TVM + I + G |
| SSC | 95 | 34,453 | 19,663/12511 | GTR + G | GTR + G | GTR + G |
| NON-IRa | 95 | 251,669 | 103,802/65656 | GTR + G | GTR + G | GTR + G |