Table 3. The most significantly differentially expressed genes changing under cold stress for cv. S29 and cv. YP and also identified in GWAS and experimental analysis of Zhao et al. (2020). Arrow ↑ means the direction of significant change with E-value < 0.05 after Benjamini–Yekutieli correction.
| S29 | YP | S29 | YP | T. aestivum gene | A. thaliana ortholog | Description according to TAIR database |
|---|---|---|---|---|---|---|
| cold 6 h | cold 24 h | |||||
| – | – | – | ↑ | TraesCS5A01G310100.1 | AT4G25480 | Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. |
| – | – | – | ↑ | TraesCS7D01G401500.1 | AT4G19390 | Uncharacterized protein family. |
| – | – | – | ↑ | TraesCS7B01G320100.3 | – | – |
| – | ↑ | – | ↑ | TraesCS3D01G019300.1 | AT3G62160 | HXXXD-type acyl-transferase family protein |
| ↑ | – | ↑ | – | TraesCS6D01G016900.1 | AT1G21230 | Encodes a wall-associated kinase The mRNA is cell-to-cell mobile. |
| ↑ | – | – | ↑ | TraesCS5D01G355500.1 | AT1G33110 | MATE efflux family protein |
| – | ↑ | ↑ | ↑ | TraesCS2D01G425200.1 | – | – |