Table 4.
Specimens | NA | Pathogens | Reference |
---|---|---|---|
Blood | DNA | Hepatitis B virus | [23,41,54,55,60,61] |
Bacillus subtilis, Escherichia coli | [28,34,41,62] | ||
Plasmodium falciparum | [32,40] | ||
Mycobacterium tuberculosis | [53,63] | ||
Orientia tsutsugamushi | [58] | ||
Staphylococcus warneri, Streptococcus agalactiae, Haemophilus influenzae | [64] | ||
RNA | Rift Valley fever virus | [28] | |
Human immunodeficiency virus | [40,61] | ||
SFTS virus | [58] | ||
Influenza A virus | [69,72] | ||
Mucosal lining or Nasopharyngeal fluids |
DNA | Bacillus anthracis | [25] |
Bordetella pertussis | [44] | ||
Mycobacterium tuberculosis | [53,63] | ||
Staphylococcus aureus | [56,68] | ||
Bacillus cereus | [66] | ||
RNA | Human immunodeficiency virus | [66] | |
Parainfluenza virus, Rhinovirus A, Metapneumovirus | [30] | ||
Respiratory-syncytial virus | [30,70] | ||
Multiple respiratory RNA viruses | [71] | ||
SARS-CoV-2 | Table 5 | ||
Urine | DNA | Staphylococcus aureus | [56] |
Escherichia coli | [75] | ||
Stools | DNA | Clostridium difficile | [27,74] |
Helicobacter pylori | [73] | ||
RNA | Human Enterovirus 71 | [27] | |
Spinal fluids | DNA | Herpes simplex virus, Varicella zoster virus | [43] |