Table 2.
The functional analysis of the downregulated genes at 1 h after LLL irradiation.
| Gene Ontology (GO) ID and Terms on Biological Process (BP) | Count | % | p-Value |
|---|---|---|---|
| GO:0032774~RNA biosynthetic process | 10 | 18.52 | 1.27 × 10−2 |
| GO:0034654~nucleobase-containing compound biosynthetic process | 10 | 18.52 | 2.59 × 10−2 |
| GO:0018130~heterocycle biosynthetic process | 10 | 18.52 | 2.79 × 10−2 |
| GO:0019438~aromatic compound biosynthetic process | 10 | 18.52 | 2.85 × 10−2 |
| GO:0016070~RNA metabolic process | 10 | 18.52 | 3.87 × 10−2 |
| GO:0034645~cellular macromolecule biosynthetic process | 10 | 18.52 | 6.07 × 10−2 |
| GO:0010467~gene expression | 10 | 18.52 | 8.40 × 10−2 |
| GO:0007267~cell–cell signaling | 5 | 9.26 | 7.48 × 10−2 |
| GO:0006614~SRP-dependent cotranslational protein targeting to membrane | 3 | 5.56 | 4.74 × 10−3 |
| GO:0006613~cotranslational protein targeting to membrane | 3 | 5.56 | 5.44 × 10−3 |
| GO:0045047~protein targeting to ER | 3 | 5.56 | 5.54 × 10−3 |
| GO:0072599~establishment of protein localization to endoplasmic reticulum | 3 | 5.56 | 5.96 × 10−3 |
| GO:0000184~nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 3 | 5.56 | 7.67 × 10−3 |
| GO:0070972~protein localization to endoplasmic reticulum | 3 | 5.56 | 8.28 × 10−3 |
| GO:0019083~viral transcription | 3 | 5.56 | 1.60 × 10−2 |
| GO:0006413~translational initiation | 3 | 5.56 | 1.74 × 10−2 |
| GO:0006612~protein targeting to membrane | 3 | 5.56 | 1.76 × 10−2 |
| GO:0019080~viral gene expression | 3 | 5.56 | 1.79 × 10−2 |
| GO:0000956~nuclear-transcribed mRNA catabolic process | 3 | 5.56 | 2.05 × 10−2 |
| GO:0044033~multiorganism metabolic process | 3 | 5.56 | 2.20 × 10−2 |
| GO:0006402~mRNA catabolic process | 3 | 5.56 | 2.33 × 10−2 |
| GO:0006401~RNA catabolic process | 3 | 5.56 | 2.91 × 10−2 |
| GO:0006364~rRNA processing | 3 | 5.56 | 3.36 × 10−2 |
| GO:0016072~rRNA metabolic process | 3 | 5.56 | 3.52 × 10−2 |
| GO:0042254~ribosome biogenesis | 3 | 5.56 | 5.00 × 10−2 |
| GO:0090150~establishment of protein localization to membrane | 3 | 5.56 | 5.91 × 10−2 |
| GO:0034655~nucleobase-containing compound catabolic process | 3 | 5.56 | 6.25 × 10−2 |
| GO:0034470~ncRNA processing | 3 | 5.56 | 7.17 × 10−2 |
| GO:0046700~heterocycle catabolic process | 3 | 5.56 | 7.17 × 10−2 |
| GO:0044270~cellular nitrogen compound catabolic process | 3 | 5.56 | 7.38 × 10−2 |
| GO:0019439~aromatic compound catabolic process | 3 | 5.56 | 7.54 × 10−2 |
| GO:1901361~organic cyclic compound catabolic process | 3 | 5.56 | 8.23 × 10−2 |
| GO:0019058~viral life cycle | 3 | 5.56 | 8.55 × 10−2 |
| GO:0022613~ribonucleoprotein complex biogenesis | 3 | 5.56 | 9.37 × 10−2 |
| GO:0072657~protein localization to membrane | 3 | 5.56 | 9.67 × 10−2 |
Count: genes involved in the term; percentage (%): involved genes/total genes; p-value: modified Fisher exact p-value.