Table 4.
The functional analysis of the downregulated genes at 3 h after LLL irradiation.
| Gene Ontology (GO) ID and Terms on Biological Process (BP) | Count | % | p-Value |
|---|---|---|---|
| GO:0032774~RNA biosynthetic process | 6 | 15.79 | 3.8 × 10−2 |
| GO:0034654~nucleobase-containing compound biosynthetic process | 6 | 15.79 | 5.85 × 10−2 |
| GO:0018130~heterocycle biosynthetic process | 6 | 15.79 | 6.14 × 10−2 |
| GO:0019438~aromatic compound biosynthetic process | 6 | 15.79 | 6.21 × 10−2 |
| GO:0016070~RNA metabolic process | 6 | 15.79 | 7.52 × 10−2 |
| GO:0044085~cellular component biogenesis | 5 | 13.16 | 5.62 × 10−2 |
| GO:0006614~SRP-dependent cotranslational protein targeting to membrane | 4 | 10.53 | 1.52 × 10−5 |
| GO:0006613~cotranslational protein targeting to membrane | 4 | 10.53 | 1.88 × 10−5 |
| GO:0045047~protein targeting to ER | 4 | 10.53 | 1.94 × 10−5 |
| GO:0072599~establishment of protein localization to endoplasmic reticulum | 4 | 10.53 | 2.17 × 10−5 |
| GO:0000184~nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 4 | 10.53 | 3.20 × 10−5 |
| GO:0070972~protein localization to endoplasmic reticulum | 4 | 10.53 | 3.60 × 10−5 |
| GO:0019083~viral transcription | 4 | 10.53 | 1.01 × 10−4 |
| GO:0006413~translational initiation | 4 | 10.53 | 1.15 × 10−4 |
| GO:0006612~protein targeting to membrane | 4 | 10.53 | 1.17 × 10−4 |
| GO:0019080~viral gene expression | 4 | 10.53 | 1.20 × 10−4 |
| GO:0000956~nuclear-transcribed mRNA catabolic process | 4 | 10.53 | 1.48 × 10−4 |
| GO:0044033~multiorganism metabolic process | 4 | 10.53 | 1.66 × 10−4 |
| GO:0006402~mRNA catabolic process | 4 | 10.53 | 1.83 × 10−4 |
| GO:0006401~RNA catabolic process | 4 | 10.53 | 2.60 × 10−4 |
| GO:0006364~rRNA processing | 4 | 10.53 | 3.26 × 10−4 |
| GO:0016072~rRNA metabolic process | 4 | 10.53 | 3.51 × 10−4 |
| GO:0042254~ribosome biogenesis | 4 | 10.53 | 6.20 × 10−4 |
| GO:0090150~establishment of protein localization to membrane | 4 | 10.53 | 8.15 × 10−4 |
| GO:0034655~nucleobase-containing compound catabolic process | 4 | 10.53 | 8.94 × 10−4 |
| GO:0034470~ncRNA processing | 4 | 10.53 | 1.12 × 10−3 |
| GO:0046700~heterocycle catabolic process | 4 | 10.53 | 1.12 × 10−3 |
| GO:0044270~cellular nitrogen compound catabolic process | 4 | 10.53 | 1.18 × 10−3 |
| GO:0019439~aromatic compound catabolic process | 4 | 10.53 | 1.22 × 10−3 |
| GO:1901361~organic cyclic compound catabolic process | 4 | 10.53 | 1.41 × 10−3 |
| GO:0019058~viral life cycle | 4 | 10.53 | 1.51 × 10−3 |
| GO:0022613~ribonucleoprotein complex biogenesis | 4 | 10.53 | 1.76 × 10−3 |
| GO:0072657~protein localization to membrane | 4 | 10.53 | 1.85 × 10−3 |
| GO:0034660~ncRNA metabolic process | 4 | 10.53 | 2.87 × 10−3 |
| GO:0006412~translation | 4 | 10.53 | 4.01 × 10−3 |
| GO:0072594~establishment of protein localization to organelle | 4 | 10.53 | 4.47 × 10−3 |
| GO:0043043~peptide biosynthetic process | 4 | 10.53 | 4.49 × 10−3 |
| GO:0016071~mRNA metabolic process | 4 | 10.53 | 4.58 × 10−3 |
| GO:1902582~single-organism intracellular transport | 4 | 10.53 | 5.04 × 10−3 |
| GO:0006605~protein targeting | 4 | 10.53 | 5.16 × 10−3 |
| GO:0043604~amide biosynthetic process | 4 | 10.53 | 5.92 × 10−3 |
| GO:0006518~peptide metabolic process | 4 | 10.53 | 7.94 × 10−3 |
| GO:0044802~single-organism membrane organization | 4 | 10.53 | 9.30 × 10−3 |
| GO:0033365~protein localization to organelle | 4 | 10.53 | 1.04 × 10−2 |
| GO:0006396~RNA processing | 4 | 10.53 | 1.07 × 10−2 |
| GO:0016032~viral process | 4 | 10.53 | 1.26 × 10−2 |
| GO:0044764~multiorganism cellular process | 4 | 10.53 | 1.28 × 10−2 |
| GO:0044265~cellular macromolecule catabolic process | 4 | 10.53 | 1.29 × 10−2 |
| GO:0043603~cellular amide metabolic process | 4 | 10.53 | 1.36 × 10−2 |
| GO:0044403~symbiosis, encompassing mutualism through parasitism | 4 | 10.53 | 1.37 × 10−2 |
Count: genes involved in the term; percentage (%): involved genes/total genes; p-value: modified Fisher exact p-value.