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. 2021 Apr 30;22(9):4766. doi: 10.3390/ijms22094766
(S)-BMS-200 S-enantiomer of BMS-200
(R)-BMS-200 R-enantiomer of BMS-200
(MOD)-BMS-200   replacing the hydroxyl of (S)-BMS-200 with carbonyl
S system PD-L1 dimer/(S)-BMS-200
R system PD-L1 dimer/(R)-BMS-200
MOD system PD-L1 dimer/(MOD)-BMS-200
PD-L1 programmed cell death ligand-1
PD-1 programmed cell death-1
mAbs monoclonal antibodies
MW molecular weight
BMS Bristol–Myers Squibb
PDB Protein Data Bank
MD molecular dynamics
MM-PBSA molecular mechanics–Poisson Bolzmann surface area
APD-L1 PD-L1 chain A
BPD-L1 PD-L1 chain B
FEL free energy landscape
PPI protein–protein interaction
H bond hydrogen bond
GAFF general Amber force field
PME particle mesh Ewald
Egas gas-phase energy
Gsol solvation-free energy
Evdw van der Waals energy
Eele electrostatic energy
EPB polar solvation energy
ESA nonpolar solvation energy
ΔS entropy change
VMD visual molecular dynamics
PCA principal component analysis
RMSD root mean square deviation
PLIP Protein–Ligand Interaction Profiler
RMSF root mean square fluctuation
PC principal component