Table 5.
Binding-free energies and each contributing energy term (±standard deviation; SD) for the investigated ligand-Mpro systems.
| Energy terms (kJ/mol ± SD) | N3 |
SAP5 |
SAP8 |
|||||
|---|---|---|---|---|---|---|---|---|
| 10–20 ns | 30–60 ns | 10–40 ns | 45–100 ns | 10–20 ns | 30–40 ns | 50–60 ns | 70–100 ns | |
| ΔEVan der Waal | −223.49 ± 16.13 | −191.55 ± 25.47 | −191.92 ± 38.46 | −126.29 ± 16.69 | −131.91 ± 17.06 | −82.94 ± 24.22 | −69.16 ± 12.22 | −79.99 ± 30.70 |
| ΔEElectrostatic | −53.69 ± 16.88 | −40.34 ± 14.23 | −111.20 ± 27.54 | −44.23 ± 28.72 | −88.82 ± 26.48 | −9.01 ± 15.22 | −22.97 ± 17.83 | −18.17 ± 23.08 |
| ΔESolvation; Polar | 210.79 ± 25.22 | 205.22 ± 17.19 | 251.23 ± 44.24 | 143.33 ± 34.22 | 234.53 ± 50.14 | 217.95 ± 52.00 | 239.46 ± 56.74 | 233.36 ± 47.37 |
| ΔESolvation; SASA | −25.31 ± 2.11 | −23.10 ± 2.59 | −20.25 ± 4.26 | −16.91 ± 2.04 | −20.15 ± 2.11 | −11.37 ± 3.62 | −11.54 ± 2.11 | −10.51 ± 4.16 |
| ΔEBinding | −91.70 ± 19.98 | −49.77 ± 31.82 | −72.14 ± 38.78 | −44.10 ± 61.80 | −6.35 ± 46.55 | 114.64 ± 63.03 | 135.79 ± 49.15 | 124.69 ± 73.97 |