Table 1.
A summary of GWAS data in iCPAGdb
| Type | Traits/diseases # | SNPs (p < 5e−8) | Trait-SNP associations # | Website | |
|---|---|---|---|---|---|
| NHGRI catalog | Clinical GWAS | 3793 | 63,933 | 85,639 | https://www.ebi.ac.uk/gwas/ |
| H2P2 | Molecular/ cellular GWAS | 79 (44 flow cytometric phenotypes + 35 cytokines) | 17 | 3489 (p < 1e−5) | http://h2p2.oit.duke.edu |
| Blood metabolites | Molecular GWAS | 491 blood (453 metabolites + 38 xenobiotics) | 1441 | 2024 | http://metabolomics.helmholtz-muenchen.de/gwas/ |
| Urine metabolites | Molecular GWAS | 55 urine | 149 | 171 | http://metabolomics.helmholtz-muenchen.de/gwas/ |
| Sum | 4418 | 65,540 | 91,323 |
GWAS summary statistics were clumped to include only a lead SNP for each trait locus