TABLE 3:

Reactions and propensities in the compartmental gene expression model.

reaction index	reaction	propensity
1,…,nG	Gi−1 → Gi, i = 1,…, nG − 1	$k_{i-1}^{+}\left[G_{i-1}\right]$
nG + 1,…, 2nG	Gi → Gi−1, i = 1,…, nG − 1	$k_i^{-}\left[G_i\right]$
2nG + 1,…, 3nG − 1	Gi → Gi + RNAunc, i = 1,…, nG − 1	ri[Gi]
3nG	RNAnuc → RNAcyt	ktrans [RNAnuc]
3nG + 1	RNAcyt → ∅	γ[RNAcyt]