Table 3.
qpWave/qpAdm admixture models
| Period | Test | Ref1 | Ref2 | Ref3 | Mixture Prop. Ref1 ± SE | Mixture Prop. Ref2 ± SE | Mixture Prop. Ref3 ± SE | p value |
|---|---|---|---|---|---|---|---|---|
| EBA | Kou01 | Anatolia_N | CHG | 0.75 ± 0.03 | 0.25 ± 0.03 | 0.67 | ||
| Kou01 | Anatolia_N | Iran_N | 0.75 ± 0.03 | 0.25 ± 0.03 | 0.90 | |||
| Kou03 | Anatolia_N | CHG | 0.69 ± 0.03 | 0.31 ± 0.03 | 0.10 | |||
| Mik15 | Anatolia_N | CHG | 0.84 ± 0.03 | 0.16 ± 0.03 | 0.08 | |||
| Mik15 | Anatolia_N | Iran_N | 0.84 ± 0.03 | 0.16 ± 0.03 | 0.07 | |||
| Pta08 | Mik15 | Iran_N | 0.98 ± 0.03 | 0.02 ± 0.03 | 0.09 | |||
| Pta08 | Mik15 | CHG | 0.99 ± 0.03 | 0.01 ± 0.01 | 0.07 | |||
| Kou01 | Anatolia_N | CHG | EHG | 0.74 ± 0.04 | 0.25 ± 0.03 | 0.01 ± 0.02 | 0.67 | |
| Kou01 | Anatolia_N | Iran_N | EHG | 0.74 ± 0.03 | 0.24 ± 0.03 | 0.02 ± 0.02 | 0.88 | |
| Kou03 | Anatolia_N | Iran_N | EHG | 0.67 ± 0.03 | 0.25 ± 0.03 | 0.08 ± 0.02 | 0.82 | |
| MBA | Log02 | Kou01 | EHG | 0.81 ± 0.02 | 0.19 ± 0.02 | 0.07 | ||
| Log02 | Kou03 | WHG | 0.91 ± 0.02 | 0.09 ± 0.02 | 0.06 | |||
| Log02 | Anatolia_N | Balkans_LBA | CHG | 0.22 ± 0.05 | 0.65 ± 0.06 | 0.12 ± 0.04 | 0.08 | |
| Log02∗ | Kou01 | Steppe_MLBA | 0.61 ± 0.03 | 0.39 ± 0.03 | 0.20 | |||
| Log02∗ | Kou01 | Europe_LNBA | 0.56 ± 0.04 | 0.44 ± 0.04 | 0.05 | |||
| Log04 | Kou01 | Balkans_LBA | 0.21 ± 0.06 | 0.79 ± 0.06 | 0.08 | |||
| Log04 | Kou03 | Balkans_LBA | 0.26 ± 0.07 | 0.74 ± 0.07 | 0.07 | |||
| Log04 | Mik15 | Balkans_LBA | 0.21 ± 0.06 | 0.79 ± 0.06 | 0.06 | |||
| Log04 | Anatolia_N | CHG | EHG | 0.58 ± 0.03 | 0.16 ± 0.03 | 0.27 ± 0.02 | 0.12 | |
| Log04∗ | Anatolia_N | Steppe_EMBA | 0.53 ± 0.03 | 0.47 ± 0.03 | 0.35 | |||
| Log04∗ | Anatolia_N | Steppe_MLBA | 0.38 ± 0.03 | 0.62 ± 0.03 | 0.13 | |||
| Log04∗ | Pta08 | Balkans_LBA | 0.15 ± 0.04 | 0.85 ± 0.04 | 0.06 | |||
| Log04∗ | Pta08 | Steppe_MLBA | 0.44 ± 0.03 | 0.56 ± 0.03 | 0.36 | |||
| LBA | Mycenaean | Log04 | Minoan_Lasithi | 0.36 ± 0.04 | 0.64 ± 0.04 | 0.35 | ||
| Mycenaean | Log04 | Minoan_Odigitria | 0.21 ± 0.04 | 0.79 ± 0.04 | 0.45 | |||
| Mycenaean | Anatolia_N | Kou03 | 0.37 ± 0.09 | 0.63 ± 0.09 | 0.40 | |||
| Present-day | Crete | Log02 | Iran_N | 0.82 ± 0.04 | 0.18 ± 0.04 | 0.08 | ||
| Cypriot | Pta08 | CHG | Villabruna | 0.64 ± 0.02 | 0.32 ± 0.02 | 0.04 ± 0.01 | 0.31 | |
| Cypriot | Pta08 | CHG | WHG | 0.65 ± 0.02 | 0.32 ± 0.02 | 0.03 ± 0.01 | 0.23 | |
| Greek | Log02 | EHG | 0.93 ± 0.02 | 0.07 ± 0.02 | 0.16 | |||
| Greek | Log02 | MA1 | 0.96 ± 0.02 | 0.04 ± 0.02 | 0.10 | |||
| Greek | Log02 | Kostenki14 | 0.93 ± 0.02 | 0.07 ± 0.02 | 0.07 |
For a test population, the estimated admixture proportions (±1 standard error, SE) for n = 2 or n = 3 source populations (Ref1, Ref2, and Ref3) are shown. Ancestry was inferred from both “ultimate” sources representing the earliest populations, and “proximate” sources (row labeled with a ∗ symbol) representing populations down to the Bronze Age (STAR Methods). Only a subset of the results with p values ≥0.05 are depicted. See also Tables 1 and S3.