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. Author manuscript; available in PMC: 2021 May 17.
Published in final edited form as: Cell Rep. 2021 May 4;35(5):109084. doi: 10.1016/j.celrep.2021.109084

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-human CD32 BD Biosciences Cat# 551900; RRID: AB_394290
Anti-human CD16 BD Biosciences Cat# 550383; RRID: AB_393649
Anti-human CD23 BD Biosciences Cat# 555707; RRID: AB_396053
Anti-human CD19-BV711 BioLegend Cat# 302246; RRID: AB_2562065
Anti-human CD27-PE-Cy7 eBioscience Cat# 25-0271-82; RRID: AB_1724035
Anti-human CD14-FITC BD Biosciences Cat# 557153; RRID: AB_396589
Anti-human CD3-FITC BD Biosciences Cat# 556611; RRID: AB_396484
Anti-human CD20-Alexa Fluor 700 BioLegend Cat# 302322; RRID: AB_493753
Anti-human IgD-PerCP-Cy5.5 eBioscience Cat# 46-9868-42; RRID: AB_2573920
Anti-human IgM-BV605 BioLegend Cat# 314524; RRID:AB_2562374
Anti-human IgG-APC BD Biosciences Cat# 550931; RRID: AB_398478
Anti-human IgG-FITC Jackson ImmunoResearch Cat# 109-095-008; RRID: AB_2337651
Anti-mouse CD19-BUV395 BD Biosciences Cat# 563557; RRID: AB_2722495
Anti-mouse CD3-BV711 BioLegend Cat# 100349; RRID: AB_2565841
Anti-mouse Ly6G-BV711 BioLegend Cat# 127643; RRID: AB_2565971
Anti-mouse F4/80-BV711 BioLegend Cat# 123147; RRID: AB_2564588
Anti-mouse B220-BV786 BD Biosciences Cat# 563894; RRID: AB_2738472
Anti-mouse GL7-PerCP-Cy5.5 BioLegend Cat# 144609; RRID: AB_2562978
Anti-mouse CD45.2-Alexa Fluor 647 BioLegend Cat# 109818; RRID: AB_492870
Anti-mouse CD38-Alexa Fluor 700 eBioscience Cat# 56-0381-82; RRID: AB_657740
Anti-mouse CD45.1-PE-eFluor 610 eBioscience Cat# 61-0453-82; RRID: AB_2574560
Anti-mouse Bcl6-FITC BioLegend Cat# 358513; RRID: AB_2860942
HRP-conjugated goat anti-mouse IgG BioLegend Cat# 405306; RRID: AB_315009
Biological Samples
PMBC from HIV-uninfected donors (Establishing Immunologic Assays for Determining HIV-1 Prevention and Control) This paper N/A
Chemicals, peptides, and recombinant proteins
Streptavidin-BV421 BioLegend Cat# 405226
Fixable Viability dye-eFluor 506 eBioscience Cat# 65-0866-14
Protein A agarose resin Thermo Scientific Cat# 20333
IgG elution buffer Thermo Scientific Cat# 21004
Endoproteinase LysC New England BioLabs Cat# P8109S
His60 Ni superflow resin Takara Cat# 635664
HiLoad 16/600 Superdex 200 pg column GE Healthcare Cat# 28-9893-35
Ni-NTA agarose resin QIAGEN Cat# 30230
ENrich SEC 650 10 × 300 column Biorad Cat# 7801650
DyLight 550 NHS ester Thermo Scientific Cat# 62262
DyLight 650 NHS ester Thermo Scientific Cat# 62266
Zenon Allophycocyanin human IgG labeling kit Thermo Scientific Cat# Z25451
Zenon R-Phycoerythrin human IgG labeling kit Thermo Scientific Cat# Z25455
Fluo-4 direct calcium indicator Thermo Scientific Cat# F10471
Ionomycin Millipore-Sigma Cat# I9657
SureBlue Reserve TMB Peroxidase Substrate Seracare KPL Cat# 5120-0080
CellTrace Violet (CTV) Thermo Scientific Cat# C34557
Sigma Adjuvant System Sigma Cat# S6322
FoxP3/Transcription factor Fix and Perm buffer eBioscience Cat# 00-5523-00
RBC lysing buffer Sigma Cat# R7757
QuantumPlex M Carobxyl magnetic beads Bangs Laboratories Cat# 250
Mouse Ig-Primer set Millipore-Sigma Cat# 69831
GeneJuice Millipore-Sigma Cat# 70967
293 Freestyle media Thermo Scientific Cat# 12-338-018
293 Free transfection reagent Millipore-Sigma Cat# 72181
Critical commercial assays
Mouse B cell isolation kit StemCell Technologies, Inc. Cat# 19854
Human B cell enrichment kit StemCell Technologies, Inc. Cat# 19054
iScript Bio-Rad Cat# 1708891
Deposited data
ai-mAb VH and VL sequences This paper GenBank: MT561048 - MT561059
iv1-iGL-VRC01 complex This paper PDB: 7JLK
iv4-iGL-VRC01 complex This paper PDB: 6XOC
Iv9-iGL-VRC01 complex This paper PDB: 7JLN
Iv12-iGL-12A21 complex This paper PDB: 6VRQ
Experimental models: Cell lines
293-6E National Research Council, Canada N/A
HEK293T ATCC Cat#C RL-3216
DG-75 B cells ATCC Cat# CRL-2625
Experimental models: Organisms/strains
iGL-VRC01 HC homozygous mice This paper N/A
iGL-VRC01 LC homozygous mice This paper N/A
iGL-VRC01 HC+LC homozygous mice This paper N/A
B6.SJL-Ptprca Pepcb/BoyJ The Jackson Laboratory 002014
C57BL/6J The Jackson Laboratory 000664
Oligonucleotides
Primers for antibody nested PCR and sequencing Tiller et al., 2008 N/A
Spycatcher (AA 24-121) Zakeri et al., 2012 GenBank: AFD50637.1
Spytag: GGSGGSGHHHHHHGSAHIVMVDAYKPTK Zakeri et al., 2012 N/A
Recombinant DNA
pTT3-iv4-Fab-HC-SC This paper N/A
pTT3-iv9-Fab-HC-ST This paper N/A
pTT3-iv1-scFv This paper N/A
pTT3-iGL-VRC01-HC-Fab This paper N/A
pTT3-iv4 LC This paper N/A
pTT3-iv9 LC This paper N/A
pTT3-eOD-GT8 Jardine et al., 2015 N/A
pTT3-eOD-GT8-KO Dosenovic et al., 2019 N/A
pRRL.EuB29.VRC01.BCR.GFP.WPRE McGuire et al., 2014a N/A
psPAX2 Addgene Cat# 12260
pMD2.G Addgene Cat# 12259
Software and algorithms
Flow Jo, version 9.9.4 Tree Star https://www.flowjo.com
Prism, version 8.4.1 GraphPad Software https://www.graphpad.com
ForteBio data analysis software ForteBio N/A
HKL2000 Otwinowski and Minor, 1997 https://www.hkl-xray.com/how-reference-hkl-hkl-2000-and-hkl-3000
Phaser McCoy et al., 2007 https://www.phenix-online.org/documentation/reference/phaser.html
Phenix.refine Afonine et al., 2012 https://www.phenix-online.org/documentation/reference/refinement.html
Coot Emsley et al., 2010 RRID:SCR_014222
Pymol Delano, 2002 https://pymol.org/2/
Other
SpectraMax M2 plate reader Molecular Devices https://www.moleculardevices.com
BioTek 405 select microplate washer BioTek https://www.biotek.com
FACS Aria II Becton, Dickinson and Company N/A
Symphony X50 flow cytometer Becton, Dickinson and Company N/A
IQue3 high throughput flow cytometer Intellicyt N/A
Octet RED96e ForteBio N/A
Anti-mouse IgG Fc capture (AMC) biosensors ForteBio Cat# 18-5088
Anti-human IgG Fc capture (AHC) biosensors ForteBio Cat# 18-5060
Streptavidin biosensors ForteBio Cat# 18-5019
Rock Imager Formulatrix N/A