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. 2021 May 17;12:2879. doi: 10.1038/s41467-021-23091-2

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — a, b Genomes from an outbreak in Zambia (purple markers on tree and map) are linked by genetic relatedness to genomes from neighboring countries Malawi and Tanzania (gray markers) forming two separate groups containing 16 (a) and 4 (b) outbreak genomes, respectively. The number of pairwise differences (range) between outbreak and related genomes in the Pathogenwatch score matrix are indicated on the bottom-right of the tree panel. c, d Differential distribution of trimethoprim resistance genes dfrA7 (c) and dfrA14 (d) across the two clades containing outbreak genomes. The presence of the dfr genes is indicated in red on the tree and map. The data are available at https://pathogen.watch/collection/g5pbucot6e58-hendriksen-et-al-2015.