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. 2021 Apr 24;13(5):109–120. doi: 10.1093/intbio/zyab006

Table 1.

The information about the simulation parameters in the signaling network.

Index Description Mathematical representation Parameter Value Remark
1 Deactivation of IKK Inline graphic r 1 0.2 s−1 Rate of transition
2 Activation of IKK Inline graphic r 2 0.4 s−1 Maximal rate of catalysis
K 2 240 nM Saturation coefficient of catalysis
KI 10 nM Inhibition coefficient of catalysis
N 25 Hill coefficient
3 Phosphorylation of IκB Inline graphic r 3 0.08 s−1 Maximal rate of catalysis
K 3 500 nM Saturation coefficient of catalysis
4 Dissociation of IκB/NF-κB complex Inline graphic r 4 0.4 s−1 Dissociation rate
5 Degradation of IκB d 5 d 5 0.8 nMs−1 Degradation rate
6 Association of IκB/NF-κB complex Inline graphic r 6 0.008 nM−1s−1 Association rate
7 Synthesis of IκB Inline graphic s7 0.8 s−1 Maximal rate of synthesis
K7 50 nM Saturation coefficient of synthesis
8 Synthesis of A20 Inline graphic s 8 0.4 s−1 Maximal rate of synthesis
K 8 100 nM Saturation coefficient of synthesis
9 Association of NF-κB with DNA Inline graphic r 9 0.8 s−1 Transition rate
10 Dissociation of NF-κB from DNA Inline graphic r 10 0.08 s−1 Transition rate
11 Degradation of A20 d 11 d 11 0.1 nMs−1 Degradation rate