Table 2.
Summary of differentially expressed human genes and HERVs in each dataset.
| Dataset | Number of DEGa | Number of DEHERVb | ||||
|---|---|---|---|---|---|---|
| Up-regulated | Down-regulated | Total | Up-regulated | Down-regulated | Total | |
| DENV-2 | 2942 | 1759 | 4701 | 2352 | 681 | 3033 |
| Flu-A | 5341 | 3789 | 9130 | 4810 | 1989 | 6799 |
| Flu-B | 3667 | 1877 | 5544 | 1408 | 1078 | 2486 |
| ZIKV_F | 1072 | 274 | 1346 | 536 | 68 | 604 |
| ZIKV_P | 408 | 49 | 457 | 270 | 12 | 282 |
| HCV_12h | 4 | 4 | 8 | 0 | 0 | 0 |
| HCV_36h | 354 | 49 | 403 | 152 | 2 | 154 |
| HCV_60h | 1118 | 345 | 1463 | 208 | 33 | 241 |
| WNV | 825 | 52 | 877 | 349 | 6 | 355 |
| CCHFV_Huh7_24h | 12 | 0 | 12 | 6 | 0 | 6 |
| CCHFV_Huh7_72h | 559 | 348 | 907 | 147 | 61 | 208 |
| CCHFV_HepG2_24h | 44 | 1 | 45 | 20 | 0 | 20 |
| CCHFV_HepG2_72h | 121 | 77 | 198 | 45 | 8 | 53 |
| EBV_differented-NOKs | 237 | 772 | 1009 | 245 | 146 | 391 |
| EBV_undifferented-NOKs | 90 | 173 | 263 | 70 | 36 | 106 |
| MV_MSC(5H) | 1383 | 115 | 1498 | 1128 | 85 | 1213 |
| MV_MSC(hTERT) | 733 | 191 | 924 | 319 | 64 | 383 |
| RSV | 430 | 229 | 659 | 69 | 6 | 75 |
| SARS-CoV-2_A549 | 32 | 1 | 33 | 6 | 0 | 6 |
| SARS-CoV-2_NHBE | 104 | 23 | 127 | 14 | 3 | 17 |
| RHV_6h | 1 | 0 | 1 | 2 | 1 | 3 |
aDifferentially expressed human gene; bdifferentially expressed HERV.