Table 1.

Overview of data files/data sets

Label	Name of data file/data set	File types (file extension)	Data repository and identifier (DOI or accession number)
Data file 1	Composition of ultra-minimal substrate growth medium	Portable Document Format file (.pdf)	10.6084/m9.figshare.12781193.v1 [7]
Data file 2	Quality distribution of Illumina reads	Portable Network Graphic file (.png)	10.6084/m9.figshare.13490967.v1 [11]
Data file 3	Basic quality statistics of GridION sequencing data	Portable Document Format file (.pdf)	10.6084/m9.figshare.13491147.v1 [13]
Data file 4	Average GridION read quality plot	Portable Network Graphic file (.png)	10.6084/m9.figshare.13491210.v1 [14]
Data file 5	Quast report	Portable Document Format file (.pdf)	10.6084/m9.figshare.13491228.v1 [17]
Data file 6	Short BUSCO summary	Portable Document Format file (.pdf)	10.6084/m9.figshare.13491234.v1 [19]
Data file 7	Assembly graph	Portable Network Graphic file (.png)	10.6084/m9.figshare.14370608.v1 [21]
Data file 8	Predicted Genomic Islands of P. fragi A13BB	Portable Document Format file (.pdf)	10.6084/m9.figshare.13491300.v1 [30]
Data file 9	Metabolic pathways of interest in P. fragi A13BB and associated gene clusters	Portable Document Format file (.pdf)	10.6084/m9.figshare.13507971.v1 [31]
Data set 1	Illumina and GridION sequencing reads	Fastq file (.fastq.gz)	https://identifiers.org/ncbi/insdc.sra:SRP251948 [37]
Data set 2	Genome assembly of P. fragi A13BB	Fasta file (.fna)	https://identifiers.org/insdc.gca:GCA_015767515.1 [38]