Table 1. Partial list of software used prior to tomogram reconstruction in cryo-ET with STA.

	Motion correction	Tilt-series alignment	CTF estimation	Tomogram reconstruction
IMOD [40–42]		✓	✓	✓
Warp [36]	✓		✓
EMAN2 [44]		✓	✓	✓
Dynamo [46]		✓
RELION [76]			✓
emClarity [53]			✓	✓
MotionCorr [30]	✓
MotionCor2 [32]	✓
UnBlur [31]	✓
Alignparts_lmbfgs [33]	✓
Zorro [34]	✓
Xmipp [35]	✓
RAPTOR [43]		✓
AuTom [45]		✓
UCSF tomo [47]		✓
Protomo [48]		✓
TomoAlign [51] [52]		✓
CTFFIND4 [70]			✓
Gctf [71]			✓