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. 2021 May 19;12:2956. doi: 10.1038/s41467-021-23254-1

Fig. 3. Hydroxyl radical protein foot printing and CS binding analysis of DBL1-ID2 mutant.

Fig. 3

a FPOP analysis of placental CS binding to wild-type DBL1-ID2. 13 chymotryptic peptides in VAR2CSA were found to exhibit significant protection from oxidation upon binding to placental CS (blue asterisks, p < 0.05, two-tailed Student’s t test). Two peptides (red asterisks, p < 0.05, two-tailed Student’s t test) exhibit significant exposure. Peptides not detected as oxidized in either condition are not shown. b SDS-PAGE non-reduced/reduced of DBL1-ID2 wild-type (KKKWIWKK) and mutant (KKKAIAKK). The gel shown is from one purification, the mutant DBL1-ID2 was purified three times and the wild-type protein more than three times. c Tm determination by nanoDSF melting curves of wild-type (Tm 67.7 °C) and mutant (Tm 63.7 °C) DBL1-ID2. Region between 40 °C and 80 °C is shown. d QCM biosensor kinetic measurements of wild-type (top, kD1 1.1 nM) and mutant DBL1-ID2 (bottom, no binding) to decorin CSPG. e Flow cytometry binding analyses of lung cancer cell line A549 to wild-type and mutant DBL1-ID2. Source data are provided in source data file.