Table 1.
Cases, No. (%) | |||||
---|---|---|---|---|---|
Characteristic | No Viral WGS (n = 457)a | Viral WGS (n = 101)b | P Valuec | ||
Sex | |||||
Female | 200 | 43.8 | 44 | 43.6 | .93 |
Male | 254 | 55.6 | 57 | 56.4 | |
Age group, y | |||||
<20 | 13 | 2.8 | 7 | 6.9 | .03d |
21–30 | 49 | 10.7 | 6 | 5.9 | |
31–40 | 87 | 19 | 14 | 13.9 | |
41–50 | 98 | 21.4 | 18 | 17.8 | |
51–60 | 90 | 19.7 | 20 | 19.8 | |
61–70 | 52 | 11.4 | 15 | 14.9 | |
>70 | 66 | 14.4 | 21 | 20.8 | |
Race/ethnicity | |||||
Asian/Pacific Islander | 111 | 24.3 | 39 | 38.6 |
.29 |
Black or African American | 8 | 1.8 | 2 | 2 | |
Latinx | 154 | 33.7 | 36 | 35.6 | |
White | 99 | 21.7 | 18 | 17.8 | |
Other | 22 | 4.8 | 6 | 5.9 | |
Deceased | |||||
No | 429 | 93.9 | 85 | 84.2 | .001d |
Yes | 28 | 6.1 | 16 | 15.8 |
Abbreviation: WGS, whole-genome sequencing.
aAmong 558 laboratory-confirmed cases in Santa Clara County, cases without viral WGS (n = 457) include cases with samples unavailable for sequencing (n = 420) and cases that were sequenced but yielded insufficient coverage of the viral genome (n = 37).
bComplete or near-complete viral genomes were recovered from 101 of 138 samples submitted to the Santa Clara County Public Health Laboratory.
c P values calculated using the χ 2 goodness-of-fit test.
dSignificant at the P = .05 level.