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. 2021 May 19;22:364. doi: 10.1186/s12864-021-07695-y

Table 4.

Genes that are involved in vitamin B6 metabolism and present in the bacteria genomes

Chryseobacterium sp. CHNTR56 MYb120 Sphingobacterium faecium MYb181 Comamonas sp. 12022 MYb131 Achromobacter sp. F32 MYb9 E. coli OP50
dxs dxs_1 dxs_1 dxs_1 dxs_1
_ dxs_2 dxs_2 dxs_2 dxs_2
dxs_3
pdxJ_1 pdxJ pdxJ pdxJ pdxJ
pdxJ_2 _ _ _ _
pdxH pdxH pdxH pdxH pdxH
pdxB_1 _ pdxB _ pdxB
pdxB_2 _ _ _ _
serC_1 serC serC serC serC_1
serC_2 _ _ _ serC_2
serC_3 _ _ _ _
serC_4 _ _ _ _
pdxA_1 pdxA2 pdxA2_1 pdxA2_1 pdxA
pdxA_2 _ pdxA2_2 pdxA2_2 _
_ _ pdxA2_3 pdxA2_3 _
gapA gapA_1 gapA _ gapA_1, epd_1
_ gapA_2 _ _ gapA_2, epd_2
_ _ pdxKǂ pdxKǂ pdxKǂ
_ _ pdxYǂ _ pdxYǂ

Multiple homologs in the specific route of de novo vitamin B6 pathway (D-erythrose 4-P is converted to 3-amino-1-hydroxyacetone 1-P4) for Chryseobacterium sp. CHNTR56 MYb120 (serC_1–4) and Comamonas sp. 12022 MYb131 (pdxA2_1–3) are present, which are indicated with bold. ǂ: Salvage pathway