Table 1.
Plant id | Plant name | Compound name | Binding energy | KDeep ΔG (Kcal/mol) | Interactions | ||
---|---|---|---|---|---|---|---|
(kcal/mol) | Hydrogen bond (Distance in Å) | Hydrophobic interaction (Distance in Å) | Pi-stacking | ||||
NITM1 | Tylophora indica (Burm. F.) Merrill Syn. Tylophora asthmatica (Roxb.) Wt & Arn. | Rutaecarpine | −7.9 | −6.15 | SER371 (3.23), SER373 (3.14) | PHE342 (3.16), VAL367 (3.39), LEU368 (3.67), PHE374 (3.64) | TRP436 |
NITM2 | Glycyrrhiza glabra L. | Licoagrodin | −8.7 | −9.45 | GLY339 (3.13), ASP364 (3.49), VAL367 (4.06), SER371 (3.13) | PHE338 (3.89), GLU340 (3.71), ASP364 (2.93), VAL367 (3.69), LEU368 (3.46), PHE374 (3.93), TRP436 (3.83) | |
NITM3 | Camellia sinensis L. | 3-O-Galloylepicatechin-(4Beta-6)-Epicatechin-3-O-Gallate | −8.3 | −10.95 | PHE338 (2.46), ASN370 (2.17), SER71 (2.57), SER373 (2.21), ASN437 (3.44), ASN440 (2.67) | PHE338 (3.77), PHE342 (3.63), VAL367 (3.58) | |
NITM4 | Justicia adhatoda L., Syn. Adhatoda vasica Nees | Daucosterol | −7.6 | −12.77 | PHE342 (3.23), SER373 (3.72), TRP436 (3.13) ARG509 (2.94) | LEU335 (3.41), PHE338 (3.55), PHE342 (3.51), ASP364 (3.94), VAL367 (3.72), PHE374 (3.80) | |
NITM5 | Ocimum tenuiflorum L., Syn. Ocimum sanctum L. | Caryophyllene | −8.1 | −13.77 | PHE338 (2.87), GLY339 (2.88), SER373 (2.70) | LEU335 (3.00), PHE338 (3.75), PHE342 (3.89), ASP364 (3.30), VAL367 (3.62), LEU368 (3.19), PHE374 (3.72) | |
NITM6 | Zingiber officinale Roscoe | Geraniin | −8.2 | −9.40 | VAL362 (3.79), ASP364 (3.04), VAL367 (3.29), SER371 (3.81) | LEU368 (3.68) | |
NITM7 | Curcuma longa L. | O-Demethyl demethoxycurcumin | −8.0 | −7.84 | CYS336 (3.04), ASP364 (3.84) | LEU335 (3.70), PHE338 (3.42), ASP364 (3.67), VAL367 (3.55), LEU368 (3.95), PHE374 (3.85) | PHE374, TRP436 |
NITM8 | Syzygium aromaticum L. | Tellimagrandin-II | −8.2 | −15.68 | CYS336 (2.90), PRO337 (3.52), GLY339 (3.72), GLU340 (3.37), ASN343 (3.15), ASP364 (3.73), VAL367 (3.72), SER371 (2.91), SER373 (2.93) | PHE338 (3.28), VAL367 (3.47), LEU368 (3.39) |
Binding energy—Autodock binding score; KDeep ΔG—absolute protein ligand binding affinity calculated using KDeep tool.