TABLE 5.
The alignment scores computed for the PDB sequence 3UON against 3NY8 using a miss and gap score of −2.
Target protein | Reference protein | 8DP BLOSUM min:−0.84 max: 0.73 | 8DP GPCRtm min:−0.83 max: 0.75 | 10DP BLOSUM min:−0.77 max: 0.66 | 10P GPCRtm min: −0.97 max: 0.66 |
ACM2/QNB (PDB ID: 3UON) | ADRB2/JRZ (PDB ID: 3NY8) | 0.61 | 0.62 | 0.59 | 0.54 |
ADRB2/JRZ (PDB ID: 3NY8) | ACM2/QNB (PDB ID: 3UON) | 0.47 | 0.49 | 0.43 | 0.42 |
The highest and lowest values for each profiling scoring function obtained by aligning all the diverse GPCRs available in the PDB databank are also reported.