Table 2.
Average and standard deviation of precision, Recall and F1-score obtained by each tool in the strand-specific full transcript sets analyzed. Bold font highlight the higher value for each group. No results are available for ESTScan in fungal transcripts due to the absence of a fungal model
| Group | Predictor | Precision | Recall | F1-score |
|---|---|---|---|---|
| Vertebrates | CodAn |
1.00  0.00
|
0.98  0.01
|
0.99  0.01
|
| ESTscan | 0.71  0.05 |
0.71  0.05 |
0.71  0.05 |
|
| TransDecoder | 0.70  0.11 |
0.69  0.11 |
0.70  0.11 |
|
| Prodigal | 0.53  0.08 |
0.53  0.08 |
0.53  0.08 |
|
| GeneMarkS-T | 0.99  0.00 |
0.98  0.01
|
0.98  0.01 |
|
| Invertebrates | CodAn |
0.99  0.01
|
0.96  0.03
|
0.97  0.02
|
| ESTscan | 0.60  0.19 |
0.41  0.26 |
0.47  0.25 |
|
| TransDecoder | 0.83  0.09 |
0.80  0.09 |
0.82  0.09 |
|
| Prodigal | 0.77  0.10 |
0.76  0.10 |
0.77  0.10 |
|
| GeneMarkS-T |
0.99  0.02
|
0.95  0.03 |
0.97  0.02
|
|
| Plants | CodAn |
1.00  0.00
|
0.97  0.04
|
0.98  0.02
|
| ESTscan | 0.71  0.12 |
0.70  0.12 |
0.70  0.12 |
|
| TransDecoder | 0.70  0.19 |
0.68  0.18 |
0.69  0.18 |
|
| Prodigal | 0.69  0.11 |
0.69  0.11 |
0.69  0.11 |
|
| GeneMarkS-T | 0.98  0.01 |
0.96  0.03 |
0.97  0.02 |
|
| Fungi | CodAn |
0.99  0.01
|
0.95  0.04
|
0.97  0.02
|
| ESTscan | NA | NA | NA | |
| TransDecoder | 0.67  0.17 |
0.64  0.15 |
0.65  0.16 |
|
| Prodigal | 0.71  0.13 |
0.71  0.13 |
0.71  0.13 |
|
| GeneMarkS-T | 0.98  0.01 |
0.94  0.04 |
0.96  0.02 |