Critical commercial assays |
|
RNA library prep kit for total RNA sequencing |
Illumina |
RS-122-2001 |
RNA purification kit |
QIAGEN |
74136 |
|
Deposited data |
|
Koronowski et al., 2019, Cell
|
GEO |
GSE117134 |
|
Experimental models: organisms/strains |
|
Mouse: C57Bl/6J background (10-week-old) male or female |
Corresponding article |
WT – Bmal1wt/wt, Alfp-cre−/tg |
|
Oligonucleotides |
|
qPCR primers |
This article |
Table S1 |
|
Software and algorithms |
|
JTK_CYCLE |
https://openwetware.org/wiki/HughesLab:JTK_CYCLE |
Hughes et al., 2010 |
BIO_CYCLE |
http://circadiomics.igb.uci.edu/biocycle |
Agostinelli et al., 2016 |
MetaCycle |
https://cran.r-project.org/web/packages/MetaCycle/index.html |
Wu et al., 2016 |
R |
https://cran.r-project.org/ |
R Project |
DryR |
(https://github.com/naef-lab/dryR) |
Weger et al., 2021 |
|
Other |
|
Aluminum foil |
Any |
N/A |
Dissection tools (forceps, small scissors, big scissors) |
Any |
N/A |
Red-light headlamp |
Any |
N/A |
Black trash bag/blackout curtain (for mouse transport) |
Any |
N/A |
Autoclaved 2 mL tubes |
Any |
N/A |