TABLE 2.
RG fold change and stability parameters of the six tested RGs in CD4+ T cellsa
Condition | RG | 6h |
24h |
||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Fold change |
geNorm M | BestKeeper SD | Fold change |
geNorm M | BestKeeper SD | ||||||
Mean | Upper 90% CI | Lower 90% CI | Mean | Upper 90% CI | Lower 90% CI | ||||||
PHA/DMSO | TBP | 1.08 | 1.27 | 0.93 | 0.30 | 0.13 | 1.55 | 1.87 | 1.29 | 0.55 | 0.32 |
RPL27A | 0.98 | 1.11 | 0.86 | 0.34 | 0.10 | 1.48 | 1.90 | 1.15 | 0.58 | 0.28 | |
UBE2D2 | 1.22 | 1.45 | 1.03 | 0.30 | 0.16 | 2.26 | 2.76 | 1.86 | 0.56 | 0.59 | |
HPRT1 | 2.18 | 2.41 | 1.97 | 0.58 | 0.56 | 4.08 | 5.37 | 3.09 | 0.64 | 1.01 | |
YWHAZ | 0.84 | 1.08 | 0.66 | 0.42 | 0.18 | 2.06 | 2.27 | 1.87 | 0.53 | 0.52 | |
GAPDH | 1.71 | 2.09 | 1.40 | 0.41 | 0.42 | 7.57 | 10.73 | 5.35 | 1.01 | 1.46 | |
PMAi/DMSO | TBP | 1.39 | 1.55 | 1.25 | 0.83 | 0.25 | 2.96 | 3.38 | 2.59 | 0.64 | 0.78 |
RPL27A | 1.06 | 1.06 | 1.05 | 0.81 | 0.14 | 1.86 | 2.03 | 1.70 | 0.81 | 0.45 | |
UBE2D2 | 0.77 | 0.90 | 0.66 | 0.91 | 0.23 | 4.16 | 4.92 | 3.51 | 0.69 | 1.03 | |
HPRT1 | 5.31 | 6.35 | 4.44 | 1.58 | 1.20 | 7.35 | 10.98 | 4.92 | 0.83 | 1.44 | |
YWHAZ | 0.10 | 0.11 | 0.08 | 2.17 | 1.68 | 1.32 | 1.75 | 1.00 | 0.99 | 0.23 | |
GAPDH | 1.65 | 2.01 | 1.36 | 0.92 | 0.43 | 12.18 | 16.91 | 8.76 | 1.12 | 1.80 | |
VOR/DMSO | TBP | 1.00 | 1.13 | 0.90 | 0.17 | 0.18 | 0.92 | 1.02 | 0.84 | 0.26 | 0.07 |
RPL27A | 1.01 | 1.14 | 0.89 | 0.23 | 0.13 | 1.05 | 1.20 | 0.91 | 0.20 | 0.10 | |
UBE2D2 | 1.24 | 1.33 | 1.16 | 0.21 | 0.25 | 1.19 | 1.40 | 1.01 | 0.32 | 0.17 | |
HPRT1 | 1.09 | 1.22 | 0.98 | 0.25 | 0.31 | 1.14 | 1.20 | 1.09 | 0.22 | 0.18 | |
YWHAZ | 1.00 | 1.17 | 0.85 | 0.20 | 0.25 | 1.02 | 1.06 | 0.97 | 0.21 | 0.12 | |
GAPDH | 1.25 | 1.44 | 1.08 | 0.22 | 0.33 | 1.58 | 1.77 | 1.41 | 0.37 | 0.35 | |
ROM/DMSO | TBP | 0.70 | 0.79 | 0.63 | 0.30 | 0.26 | 1.27 | 1.54 | 1.05 | 0.46 | 0.21 |
RPL27A | 0.97 | 1.06 | 0.88 | 0.24 | 0.17 | 0.99 | 1.11 | 0.89 | 0.46 | 0.08 | |
UBE2D2 | 0.99 | 1.12 | 0.87 | 0.23 | 0.20 | 0.92 | 1.02 | 0.84 | 0.55 | 0.16 | |
HPRT1 | 0.78 | 0.87 | 0.69 | 0.36 | 0.34 | 1.25 | 1.42 | 1.10 | 0.48 | 0.24 | |
YWHAZ | 0.98 | 1.06 | 0.90 | 0.22 | 0.23 | 0.32 | 0.34 | 0.29 | 1.11 | 0.83 | |
GAPDH | 1.01 | 1.14 | 0.89 | 0.27 | 0.31 | 2.49 | 2.97 | 2.10 | 0.86 | 0.66 | |
PEP005/DMSO | TBP | 1.01 | 1.06 | 0.95 | 0.43 | 0.16 | 1.06 | 1.15 | 0.98 | 0.45 | 0.07 |
RPL27A | 0.89 | 1.07 | 0.74 | 0.51 | 0.17 | 1.06 | 1.18 | 0.95 | 0.45 | 0.06 | |
UBE2D2 | 1.47 | 1.79 | 1.21 | 0.38 | 0.28 | 1.70 | 2.12 | 1.37 | 0.44 | 0.38 | |
HPRT1 | 2.01 | 2.48 | 1.62 | 0.49 | 0.50 | 1.50 | 1.75 | 1.29 | 0.38 | 0.30 | |
YWHAZ | 1.17 | 1.34 | 1.02 | 0.39 | 0.26 | 1.53 | 1.89 | 1.24 | 0.38 | 0.33 | |
GAPDH | 3.05 | 3.71 | 2.51 | 0.74 | 0.81 | 3.61 | 4.69 | 2.78 | 0.81 | 0.93 | |
AZD/DMSO | TBP | 0.92 | 1.07 | 0.79 | 0.17 | 0.17 | 0.97 | 1.07 | 0.87 | 0.17 | 0.06 |
RPL27A | 0.96 | 1.10 | 0.84 | 0.20 | 0.16 | 0.98 | 1.11 | 0.86 | 0.16 | 0.10 | |
UBE2D2 | 0.92 | 1.21 | 0.70 | 0.19 | 0.24 | 1.00 | 1.12 | 0.89 | 0.30 | 0.12 | |
HPRT1 | 0.82 | 0.94 | 0.71 | 0.31 | 0.24 | 1.00 | 1.26 | 0.79 | 0.20 | 0.22 | |
YWHAZ | 0.89 | 1.01 | 0.79 | 0.18 | 0.24 | 0.99 | 1.08 | 0.90 | 0.16 | 0.13 | |
GAPDH | 0.98 | 1.12 | 0.86 | 0.24 | 0.30 | 1.04 | 1.18 | 0.92 | 0.17 | 0.17 | |
IBET/DMSO | TBP | 0.89 | 1.01 | 0.79 | 0.30 | 0.14 | 0.85 | 1.04 | 0.70 | 0.19 | 0.16 |
RPL27A | 0.92 | 1.17 | 0.73 | 0.29 | 0.22 | 0.89 | 1.01 | 0.79 | 0.19 | 0.12 | |
UBE2D2 | 0.95 | 1.19 | 0.76 | 0.25 | 0.25 | 1.00 | 1.20 | 0.84 | 0.32 | 0.15 | |
HPRT1 | 0.93 | 1.20 | 0.71 | 0.28 | 0.29 | 0.84 | 1.00 | 0.71 | 0.24 | 0.22 | |
YWHAZ | 0.50 | 0.63 | 0.39 | 0.54 | 0.55 | 0.70 | 0.79 | 0.62 | 0.28 | 0.26 | |
GAPDH | 1.11 | 1.21 | 1.02 | 0.34 | 0.30 | 1.14 | 1.23 | 1.06 | 0.30 | 0.16 | |
STINGa/DMSO | TBP | 0.85 | 0.87 | 0.82 | 0.33 | 0.18 | 0.81 | 0.95 | 0.70 | 0.25 | 0.15 |
RPL27A | 0.81 | 0.96 | 0.68 | 0.33 | 0.22 | 0.67 | 0.80 | 0.56 | 0.19 | 0.29 | |
UBE2D2 | 0.65 | 0.70 | 0.59 | 0.28 | 0.33 | 0.77 | 0.85 | 0.71 | 0.31 | 0.24 | |
HPRT1 | 0.75 | 0.86 | 0.65 | 0.32 | 0.31 | 0.65 | 0.77 | 0.54 | 0.20 | 0.31 | |
YWHAZ | 0.39 | 0.44 | 0.35 | 0.54 | 0.68 | 0.61 | 0.67 | 0.55 | 0.22 | 0.36 | |
GAPDH | 0.63 | 0.73 | 0.55 | 0.33 | 0.41 | 0.56 | 0.74 | 0.42 | 0.29 | 0.42 |
Related to Fig. 2B. RG fold change expressed as average and 90% CI upper and lower limits under LRA conditions relative to that in DMSO in CD4+ T cells (n = 4) after 6 h and 24 h. M stability value of geNorm and SD value of BestKeeper in data set composed of two conditions (DMSO plus one LRA) from CD4+ T cells after 6 h or after 24 h. Fold change of >2 or <0.5, M value of >1.5, and SD of >1 indicate unstable RGs (highlighted in boldface font).