Table 1.

Significant TWAS genes both in CMC and LIBD datasets for depression.

Gene	Region	CMC dataset			BrainSeq2 dataset
		Best eQTL	TWAS.Z	TWAS.P	Best eQTL	TWAS.Z	TWAS.P
TCTEX1D1	chr 1:67218142–67244470	rs512691	−5.81	6.26E-09	rs10493416	−5.49	3.99E-08
ZNF501	chr 3:44771088–44778575	rs10514710	−4.69	2.68E-06	rs10514710	−4.79	1.68E-06
ZNF502	chr 3:44754135–44765323	rs10514710	−4.93	8.21E-07	rs10514710	−4.98	6.50E-07
ZMAT2a	chr 5:140078265–140086248	rs801183	−5.24	1.65E-07	rs3756341	−5.02	5.28E-07
FADS1a	chr 11:61567099–61596790	rs174568	−4.82	1.42E-06	rs174566	−5.12	3.08E-07
B3GALTL	chr 13:31774073–31906413	rs4065552	−4.79	1.70E-06	rs9543390	−5.52	3.44E-08
XPNPEP3	chr 22:41253081–41363838	rs138354	5.93	2.97E-09	rs2899341	5.18	2.26E-07

^aIndicates that the TWAS gene was not implicated in the original depression GWAS.