Antibodies |
anti-ATM |
Cell Signaling |
Cat#2873 |
anti-β-Actin |
Cell Signaling |
Cat#3700 |
anti-β-catenin |
Upstate |
Cat#06–734 |
anti-cMYC |
Santa Cruz Biotech |
Cat#sc-40 |
anti-FLAG |
Sigma-Aldrich |
Cat#F3165 |
anti-GAPDH |
Abcam |
Cat#ab9485 |
anti-HDAC2 |
Santa Cruz Biotech |
Cat#sc-7899 |
anti-HIPK2 |
Abcam |
Cat#ab75937 |
Anti-LEF1 |
Bethyl Laboratories |
Cat#A303–486A |
anti-phospho-Y361-HIPK2 |
Thermo Scientific |
Cat#PA5–13045 |
anti-phospho-S209-TCF3 |
Sergei Sokol (Hikasa and Sokol, 2011) |
N/A |
anti-phospho-S46-p53 |
Abcam |
Cat#ab76242 |
anti-phospho-S15-p53 |
Cell Signaling |
Cat#9284 |
anti-TCF4 |
Abcam |
Cat#ab217668 |
anti-TCF4 (for ChIP qPCR) |
Santa Cruz Biotechnologies |
Cat# sc-8631 |
Chemicals, Peptides, and Recombinant Proteins |
miRVana isolation kit |
Thermo Fisher |
Cat# AM1560 |
SYBR Green Supermix |
BioRad |
Cat#1708882 |
iTaq SYBR Green Supermix |
Bio-Rad |
Cat#1725120 |
QuantiTect reverse transcription kit |
Qiagen |
Cat# 205311 |
Recombinant human Wnt3a |
R&D Systems |
Cat#5036-WN |
Primary screen library |
Sanford-Burnham-Prebys Medical Discovery Institute Chemical Genomics core facility |
https://www.sbpdiscovery.org/medical-discovery/drug-discovery/prebys-center-for-drug-discovery/overview) |
Deposited Data |
Not applicable |
|
|
Experimental Models: Cell Lines |
pBARLRen cell line (derived from RKO cells) |
Moon lab, University of Washington (Biechele et al., 2009) |
N/A |
NF-kB reporter (HEK293-NF-kB-Luc) stably expressing NOD1 |
John C. Reed, |
https://pubchem.ncbi.nlm.nih.gov/bioassay/1290 |
HEK293T |
ATCC |
Cat#CRL-3216 |
SW480 |
ATCC |
Cat#CCL-228 |
Oligonucleotides |
Primers for ChIP qPCR, see Table S3
|
This paper |
N/A |
Primers for qRT-PCR, see Table S4
|
This paper |
N/A |
Taqman primers for Taqman qRT-PCR, see Table 2 |
Thermo Fisher |
See Table 2 |
Recombinant DNA |
pcDNA-Wnt3a |
(Najdi et al., 2012) |
Addgene Cat#35908 |
MYC-tagged TCF4 |
(Korinek et al., 1997) |
Addgene Cat#16512 |
Constitutively active mutant b-catenin |
(Taelman et al., 2010) |
Addgene Cat#29684 |
wildtype b-catenin |
(Lee et al., 2001) |
Addgene Cat#13434 |
pcDNA3β-FLAG-CBP-HA |
(Zhao et al., 2005) |
Addgene Cat#32908 |
pCMVβ-p300-MYC |
(Addgene depositor Tso-Pang Yao) |
Addgene Cat#30489 |
pCTX-myc-HIPK2 WT |
(Hikasa et al., 2010) |
Addgene Cat#32996 |
TCF1-FLAG |
Sergei Sokol (Hikasa and Sokol, 2011) |
N/A |
TCF3-FLAG |
Sergei Sokol (Hikasa and Sokol, 2011) |
N/A |
TCF4-FLAG |
Sergei Sokol (Hikasa and Sokol, 2011) |
N/A |
LEF1-FLAG |
Sergei Sokol (Hikasa and Sokol, 2011) |
N/A |
Software and Algorithms |
ChIP-IT qPCR Analysis Kit |
Active Motif |
https://www.activemotif.com/catalog/872/chip-it-qpcr-analysis-kit |
GraphPad Prism 7 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/ |
ChemDraw Ultra version 11 |
PerkinElmer |
https://www.perkinelmer.com/ |
Illustrator |
Adobe |
https://www.adobe.com/products/illustrator.html |
Excel |
Microsoft |
https://www.microsoft.com/en-us/microsoft-365/excel |
Biorender |
Biorender |
https://biorender.com/ |