Table 3.
KEGG pathway enrichment analysis of the targets of N starvation-responsive DEMs. S gene number: the number of significant DEM target genes that match to the specified KEGG pathway; TS gene number: the number of significant DEM target genes that have annotated KEGG pathways; B gene number: the number of DEM target genes that match to the specified KEGG pathway; TB gene number: the number of DEM target genes that have annotated KEGG pathways. The abbreviations of treatment groups are: AuCG_C (DBA Aurora control parents, progeny treated with the control), AuCG_N (DBA Aurora control parents, progeny treated with N starvation), AuWH_C (DBA Aurora water-deficit and heat stress parents, progeny treated with the control), AuWH_N (DBA Aurora water-deficit and heat stress parents, progeny treated with N starvation), L6CG_C (L6 control parents, progeny treated with the control), L6CG_N (L6 control parents, progeny treated with N starvation), L6WH_C (L6 water-deficit and heat stress parents, progeny treated with the control), and L6WH_N (L6 water-deficit and heat stress parents, progeny treated with N starvation).
| Pathway ID | KEGG Pathway Description | S Gene Number |
TS Gene Number | B Gene Number |
TB Gene Number |
|---|---|---|---|---|---|
| AuCG_N vs. AuCG_C | |||||
| ko04010 | MAPK signaling pathway | 286 | 1783 | 2171 | 50,492 |
| ko04620 | Toll-like receptor signaling pathway | 167 | 1783 | 1298 | 50,492 |
| ko04624 | Toll and Imd signaling pathway | 126 | 1783 | 633 | 50,492 |
| ko05145 | Toxoplasmosis | 118 | 1783 | 1046 | 50,492 |
| ko04621 | NOD-like receptor signaling pathway | 104 | 1783 | 1111 | 50,492 |
| AuWH_N vs. AuWH_C | |||||
| ko04010 | MAPK signaling pathway | 101 | 1556 | 2171 | 50,492 |
| ko04070 | Phosphatidylinositol signaling system | 91 | 1556 | 1224 | 50,492 |
| ko04141 | Protein processing in endoplasmic reticulum | 89 | 1556 | 2406 | 50,492 |
| ko00562 | Inositol phosphate metabolism | 84 | 1556 | 989 | 50,492 |
| ko00230 | Purine metabolism | 84 | 1556 | 1483 | 50,492 |
| L6CG_N vs. L6CG_C | |||||
| ko04141 | Protein processing in endoplasmic reticulum | 170 | 1451 | 2406 | 50,492 |
| ko04070 | Phosphatidylinositol signaling system | 116 | 1451 | 1224 | 50,492 |
| ko00562 | Inositol phosphate metabolism | 85 | 1451 | 989 | 50,492 |
| ko00250 | Alanine, aspartate and glutamate metabolism | 73 | 1451 | 542 | 50,492 |
| ko04144 | Endocytosis | 72 | 1451 | 1720 | 50,492 |
| L6WH_N vs. L6WH_C | |||||
| ko04010 | MAPK signaling pathway | 326 | 1905 | 2171 | 50,492 |
| ko04620 | Toll-like receptor signaling pathway | 186 | 1905 | 1298 | 50,492 |
| ko05145 | Toxoplasmosis | 126 | 1905 | 1046 | 50,492 |
| ko04141 | Protein processing in endoplasmic reticulum | 125 | 1905 | 2406 | 50,492 |
| ko04624 | Toll and Imd signaling pathway | 122 | 1905 | 633 | 50,492 |