Fig. 3.

Samplot creates images for a quick review of SV VCF files. Samplot’s “samplot vcf” command will plot all SVs in a VCF file or filter to a subset via user-defined statements. “Samplot vcf” creates an index page and sends commands to “samplot plot,” which generates images for each variant that passes the filters. The index.html page displays a table of variant info. Clicking on a row loads a Samplot image, allowing additional filtering or variant prioritization