Table 2.

Average frequency of the minor allele in generation 0 (× 10²) across generations (t) for SNPs and unobserved loci when contributions are equalized (S_E) and when they are optimized using Li and Horvitz (S_{O_LH}) and VanRaden (S_{O_VR}) coancestry matrices in a population of 100 individuals.

		SNPs				Unobserved Loci
t		SE	SO_LH	SO_VR		SE	SO_LH	SO_VR
0		13.45	13.45	13.45		13.39	13.39	13.39
1		13.44	13.68	13.45		13.39	13.60	13.40
2		13.44	13.81	13.45		13.39	13.72	13.40
3		13.44	13.94	13.45		13.38	13.82	13.39
4		13.44	14.06	13.44		13.38	13.93	13.39
5		13.44	14.17	13.44		13.38	14.02	13.39
10		13.44	14.67	13.41		13.38	14.44	13.36
15		13.45	15.08	13.37		13.39	14.77	13.33
20		13.44	15.42	13.32		13.39	15.05	13.29
30		13.44	15.96	13.23		13.39	15.46	13.23
40		13.45	16.36	13.12		13.39	15.75	13.15
50		13.45	16.67	13.01		13.40	15.98	13.07