Table 4.
Sample A: Comparison of MinION and MALDI-TOF MS, a—Acinetobacter baylyi ADP1 [44], b—Enterobacter roggenkampii, c—Enterobacter hormaechei subsp. hoffmannii [45], ND—not defined.
| Taxon | Specifics of MALDI-TOF MS Identification | Reads | Position by Reads | ||
|---|---|---|---|---|---|
| 48 h | 0 h | 48 h | 0 h | ||
| Acinetobacter sp. ADP1 a | Acinetobacter baylyi | 21,635 | 2 | 1 | 35 |
| Acinetobacter baumannii | Acinetobacter baumannii | 13,329 | 16 | 6 | 9 |
| Acinetobacter johnsonii | Acinetobacter johnsonii | 2889 | 1 | 14 | 63 |
| Acinetobacter soli | Not present in Biotyper 3.1 | 1182 | 0 | 19 | ND |
| Enterobacter cloacae | Enterobacter cloacae | 20,766 | 95 | 2 | 3 |
| E. cloacae complex ‘Hoffmann cluster IV’ b | Enterobacter cloacae complex | 3298 | 9 | 11 | 11 |
| E. cloacae complex sp. 35734 | 3145 | 9 | 12 | 12 | |
| Enterobacter ludwigii | 2240 | 3 | 15 | 22 | |
| Enterobacter asburiae | 2964 | 14 | 13 | 10 | |
| E. cloacae complex ‘Hoffmann cluster III’ c | 1458 | 1 | 18 | 38 | |
| Klebsiella pneumoniae | Klebsiella pneumoniae | 17,266 | 84 | 3 | 4 |
| Klebsiella variicola | Klebsiella variicola | 5058 | 6 | 7 | 16 |
| Escherichia coli | Escherichia coli | 14,722 | 6689 | 4 | 1 |
| Pseudomonas putida | Pseudomonas putida complex | 13,492 | 0 | 5 | ND |
| Pseudomonas sp. JY-G | Pseudomonas spp. | 2157 | 0 | 16 | ND |
| Citrobacter freundii | Citrobacter freundii | 4455 | 9 | 8 | 13 |
| Citrobacter sp. FDAARGOS_156 | Not present in Biotyper 3.1 | 1563 | 2 | 17 | 31 |
| Raoultella ornithinolytica | Raoultella ornithinolytica | 3632 | 4 | 9 | 19 |
| Arcobacter butzleri | NOT ISOLATED | 3542 | 0 | 10 | ND |
| Comamonas testosteroni | NOT ISOLATED | 1128 | 0 | 20 | ND |
| Cronobacter sakazakii | Cronobacter sp. | 607 | 7 | 35 | 14 |
| Streptococcus gallolyticus | Streptococcus gallolyticus | 275 | 341 | 59 | 2 |