Table 5.
Sample B: Comparison of MinION and MALDI-TOF MS identification, ND—not defined.
| Taxon | Specifics of MALDI-TOF MS Identification | Reads | Position by Reads | ||
|---|---|---|---|---|---|
| 48 h | 0 h | 48 h | 0 h | ||
| Lactococcus lactis | Lactococcus lactis | 40,430 | 20 | 1 | 31 |
| Lactococcus raffinolactis | Lactococcus raffinolactis | 14,239 | 38 | 5 | 24 |
| Lactococcus garvieae | NOT ISOLATED | 3250 | 2 | 16 | 150 |
| Pseudomonas fluorescens | Pseudomonas spp. | 27,860 | 1224 | 2 | 3 |
| Pseudomonas putida | Pseudomonas spp. | 22,926 | 40 | 3 | 20 |
| Pseudomonas alkylphenolica | 13,026 | 2 | 6 | 138 | |
| Pseudomonas chlororaphis | 5581 | 30 | 10 | 26 | |
| Pseudomonas mosselii | 4980 | 9 | 11 | 54 | |
| Pseudomonas sp. HLS-6 | 2970 | 0 | 19 | 0 | |
| Pseudomonas protegens | 2739 | 19 | 20 | 33 | |
| Pseudomonas monteilii | 4198 | 62 | 15 | 14 | |
| Escherichia coli | NOT ISOLATED | 14,569 | 4373 | 4 | 1 |
| Pantoea agglomerans | Pantoea agglomerans | 10,543 | 1491 | 7 | 2 |
| Weissella cibaria | Weissella cibaria | 10,120 | 149 | 8 | 8 |
| Enterobacter asburiae | Enterobacter asburiae | 5890 | 70 | 9 | 12 |
| Enterobacter cloacae | Enterobacter cloacae | 3122 | 69 | 18 | 13 |
| Serratia liquefaciens | Serratia liquefaciens | 4546 | 42 | 12 | 18 |
| Kosakonia cowanii | NOT ISOLATED | 4273 | 150 | 13 | 7 |
| Pectobacterium carotovorum | NOT ISOLATED | 4210 | 10 | 14 | 47 |
| Acinetobacter johnsonii | NOT ISOLATED | 3237 | 209 | 17 | 5 |
| Acinetobacter pittii | Acinetobacter pittii | 1686 | 29 | 38 | 27 |
| Aeromonas hydrophila | Aeromonas spp. | 2111 | 0 | 33 | 0 |
| Erwinia gerundensis | Erwinia persicina | 1621 | 132 | 39 | 10 |
| Klebsiella pneumoniae | NOT ISOLATED | 673 | 9 | 68 | 50 |
| Klebsiella variicola | Klebsiella variicola | 188 | 0 | 130 | 0 |
| Klebsiella oxytoca | Klebsiella oxytoca | 998 | 5 | 54 | 76 |
| Citrobacter freundii | Citrobacter freundii | 1203 | 2 | 45 | 112 |
| Cronobacter sakazakii | Cronobacter spp. | 65 | 4 | 173 | 88 |
| Paenibacillus naphthalenovorans | Paenibacillus naphthalenovorans | 1 | 0 | 1685 | ND |
| Acinetobacter spp. not covered by Biotyper 3.1 | Acinetobacter bereziniae/quillouiae | 4829 | 99 | ND | ND |