Table 7.
Distribution of ARGs through species, a—reads of single species.
| Taxon | Sample A (48h) | Sample B (48h) | ||||
|---|---|---|---|---|---|---|
| Genes | Alignments | Reads a | Genes | Alignments | Reads a | |
| Total number | 236 | 5225 | 202,867 | 192 | 4505 | 366,947 |
| Gram-negative bacteria | 94% | 99% | 44% | 84% | 94% | 15% |
| Escherichia coli | 40% | 53% | 7% | 34% | 38% | 4% |
| Enterobacter cloacae | 6% | 6% | 10% | 5% | 2% | 1% |
| Klebsiella pneumoniae | 8% | 4% | 9% | 4% | 1% | <0.5% |
| Acinetobacter baumannii | 9% | 3% | 7% | 5% | 1% | 1% |
| Pseudomonas aeruginosa | 10% | 8% | <0.5% | 14% | 26% | <0.5% |
| Salmonella enterica | 4% | 17% | <0.5% | 4% | 18% | <0.5% |
| Neisseria gonorrhoeae | 1% | 1% | <0.5% | 1% | 2% | <0.5% |
| Neisseria meningitidis | <0.5% | 3% | <0.5% | 1% | 3% | <0.5% |
| Stenotrophomonas maltophilia | 2% | 1% | <0.5% | 1% | <0.5% | <0.5 |
| Other gram-negative bacteria | 13% | 4% | 11% | 17% | 3% | 9% |
| Gram-positive bacteria | 6% | 1% | <0.5% | 16% | 6% | 11% |
| Enterococcus faecium | <0.5% | 1% | <0.5% | 1% | 1% | <0.5% |
| Lactococcus lactis | 0% | 0% | <0.5% | 1% | 2% | 11% |
| Mycobacterium spp. | 3% | <0.5% | <0.5% | 9% | 2% | <0.5% |
| Other gram-positive bacteria | 3% | <0.5% | <0.5% | 4% | 1% | <0.5% |