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. 2021 Apr 28;10(5):892. doi: 10.3390/plants10050892

Table 1.

Microbiota present in the soil and wood of the diseased poplar.

No. Taxon Order Soil Wood Trophic Group
Chromista
Oomycota
1. Aphanomyces spp. Saprolegniales 0.042 Pathogens
2. Elongisporangium anandrum (Drechsler) Uzuhasi, Tojo & Kakish Peronosporales 0.004 Pathogen
3. Globisporangium apiculatum (B. Paul) Uzuhashi, Tojo & Kakish. + G. heterothallicum W.A. Campb. & F.F. Hendrix + G. intermedium (de Bary) Uzuhashi, Tojo & Kakish. + G. macrosporum (Vaartaja & Plaäts-Nit.) Uzuhashi, Tojo & Kakish. + G. mamillatum (Meurs) Uzuhashi, Tojo & Kakish. + G. pleroticum (Takesi Itô) Uzuhashi, Tojo & Kakish. + G. sylvaticum (W.A. Campb. & F.F. Hendrix) Uzuhashi, Tojo & Kakish. + G. ultimum (Trow) Uzuhashi, Tojo & Kakish Peronosporales 1.010 0.001 Pathogens
4. Hyaloperonospora cochleariae (Gäum.) Göker, Riethm., Voglmayr, Weiss & Oberw Peronosporales 0.017 Pathogen
5. Isoachlya intermedia (Coker & J.V. Harv.) Coker Saprolegniales 0.007 Saprotroph
6. Myzocytiopsis sp. Peronosporales 0.005 Nematopathogenic
7. Phytophthora brassicae De Cock & Man in ‘t Veld + P. citricola Sawada + P. clandestina P.A. Taylor, Pascoe & F.C. Greenh Peronosporales 0.040 Pathogens
8. Pythium conidiophorum Jokl. + P. oligandrum Drechsler + P. pachycaule Ali-Shtayeh + P. selbyi M.L. Ellis, Broders & Dorrance + P. vanterpoolii V. Kouyeas & H. Kouyeas + P. volutum Vanterp. & Truscott + Pythium spp. Peronosporales 0.053 0.001 Pathogens
9. Thraustotheca clavata (de Bary) Humphrey Saprolegniales 0.021 Saprotroph
Frequency Oomycota 1.199 0.002
Number of taxa Oomycota 26 2
Fungi
Blastocladiomycota
Frequency Blastocladiomycota 0.005
Number of taxa Blastocladiomycota 1
Chytridiomycota
1. Chytridiomycota 0.004
2. Rhizophydium sp. Rhizophydiales 0.004 Pathogen
Frequency Chytridiomycota 0.008
Number of taxa Chytridiomycota 2
Glomeromycota
1. Entrophospora sp. Diversisporales 0.001
Frequency Glomeromycota 0.001 Mycorrhizal
Number of taxa Glomeromycota 2
Zygomycota
1. Mortierella alpina Peyronel + M. amoeboidea W. Gams + M. antarctica Linnem. + M. elongata Linnem. + M. epicladia W. Gams & Emden + M. exigua Linnem. + M. fatshederae Linnem. + M. gamsii Milko + M. horticola Linnem. + M. humilis Linnem. + M. hyalina (Harz) W. Gams + Mortierella spp. Mortierellales 3.483 0.006 Saprotrophs
2. Mortierellales Mortierellales 0.006
3. Mucor racemosus Bull. Mucorales 0.012 Saprotrophs
4. Ramicandelaber sp. Kickxellales 0.004
5. Rhizopus arrhizus A. Fisch. + R. oryzae Went & Prins. Geerl. Mucorales 0.019
6. Syncephalis sp. Zoopagales 0.107 Mycoparasite
Frequency Zygomycota 3.631 0.006
Number of taxa Zygomycota 18 3
Ascomycota
1. Acaulium retardatum (Udagawa & T. Muroi) Lei Su Microascales 0.004 Saprotroph
2. Acericola italica Wanas., Camporesi, E.B.G. Jones & K.D. Hyde Pleosporales 0.001
3. Acremonium persicinum (Nicot) W. Gams + A. rutilum W. Gams Hypocreales 0.001 0.002 Saprotrophs
4. Acrodontium crateriforme (J.F.H. Beyma) de Hoog Incertae sedis 0.013
5. Alatospora acuminata Ingold + Alatospora sp. Helotiales 0.113 0.026
6. Alternaria alternata (Fr.) Keissl. + A. botrytis (Preuss) Woudenb. & Crous + A. infectoria E.G. Simmons + A. tenuissima (Kunze) Wiltshire + Alternaria sp. Pleosporales 0.065 0.039 Pathogens
7. Amesia nigricolor (L.M. Ames) X. Wei Wang & Samson Sordariales 0.001 Saprotroph
8. Angustimassarina acerina Jayasiri, Thambug., R.K. Schumach. & K.D. Hyde + A. populi Thambug. & K.D. Hyde Pleosporales 0.354 Mycoparasite
9. Arthoniomycetes 0.001 0.001
10. Ascobolus sp. Pezizales 0.005 Saprotroph, coprophilous
11. Ascochyta skagwayensis (R. Sprague) Punith. Pleosporales 0.001 Saprotroph, pathogen
12. Ascomycete 0.027
13. Ascomycota 1.123 0.215
14. Aspergillus conicus Blochwitz + A. niger Tiegh. + A. penicillioides Speg. + A. versicolor (Vuill.) Tirab. Eurotiales 0.008 0.003 Saprotrophs
15. Atrocalyx lignicola (Ying Zhang, J. Fourn. & K.D. Hyde) A. Hashim. & Kaz. Tanaka Pleosporales 0.009 Saprotroph
16. Aureobasidium melanogenum (Herm.-Nijh.) Zalar, Gostinčar & Gunde-Cim. + A. pullulans (de Bary & Löwenthal) G. Arnaud + Aureobasidium sp. Dothideales 0.003 0.013 Saprotrophs, often aquatic
17. Bacidina sp. Lecanorales 0.018 Lichenicolous
18. Beauveria bassiana (Bals.-Criv.) Vuill. + Beauveria sp. Hypocreales 0.049 0.002 Entomopathogenic
19. Blastobotrys malaysiensis Kurtzman + Blastobotrys sp. Saccharomycetales 0.009 0.013 Saprotrophs
20. Boeremia exigua (Desm.) Aveskamp, Gruyter & Verkley + B. noackiana (Allesch.) Gruyter & Verkley Pleosporales 0.006 0.017 Pathogens
21. Cadophora luteo-olivacea (J.F.H. Beyma) T.C. Harr. & McNew + C. spadicis Travadon, D.P. Lawr., Roon.-Lath., Gubler, W.F. Wilcox, Rolsh. & K. Baumgartner + Cadophora sp. Helotiales 0.114 1.435 Pathogens
22. Candida sake (Saito & M. Ota) Uden & H.R. Buckley ex S.A. Mey. & Ahearn + C. subhashii M. Groenew., Sigler & S.E. Richardson + C. vartiovaarae (Capr.) Uden & H.R. Buckley + Candida sp. Saccharomycetales 0.093 0.012 Saprotrophs
23. Capnobotryella renispora Sugiy Capnodiales 0.005 Saprotroph
24. Capnodiales Capnodiales 0.017
25. Cenococcum geophilum Fr. Mytilinidiales 0.039 Ectomycorrhizal
26. Cephalothecaceae Sordariales 0.003 Saprotrophs, mycoparasites
27. Ceratostomataceae Melanosporales 0.004 Saprotrophs, mycoparasite
28. Cercophora sp. Sordariales 0.014 Coprophilous
29. Cercosporabeticola Sacc. Capnodiales 0.012 Pathogen
30. Chaetomiaceae Sordariales 0.085 Saprotrophs
31. Chaetomium globosum Kunze + Ch. piluliferum J. Daniels + Chaetomium sp. Sordariales 0.062 0.002 Saprotrophs, endophytes
32. Chaetosphaeria vermicularioides (Sacc. & Roum.) W. Gams & Hol.-Jech. Chaetosphaeriales 0.005 Saprotroph
33. Chaetothyriales Chaetothyriales 0.104 Parasites of humans and cold-blooded animals
34. Chalara microspora (Corda) S. Hughes + Chalara sp. Helotiales 0.007 0.001 Saprotroph
35. Chloridium paucisporum C.J.K. Wang & H.E. Wilcox Helotiales 0.001 Ectendomycorrhizal
36. Chrysosporium pseudomerdarium Oorschot Onygenales 0.004 Endophyte
37. Cistella albidolutea (Feltgen) Baral Helotiales 0.003 Saprotroph
38. Cladophialophora minutissima M.L. Davey & Currah + Cladophialophora sp. Chaetothyriales 0.002 Saprotrophs, human pathogens
39. Cladorrhinum flexuosum Madrid, Cano, Gené & Guarro Sordariales 0.008 Saprotroph
40. Cladosporium allicinum  (Fr.) Bensch, U. Braun & Crous + C. cladosporioides (Fresen.) G.A. de Vries + C. colocasiae Sawada Capnodiales 0.096 0.015 Saprotrophs, facultative plant pathogens, mycoparasites
41. Clonostachys divergens Schroers + C. parva (Schroers) Rossman, L. Lombard & Crous + C. rosea (Link) Schroers, Samuels + Clonostachys sp. Hypocreales 0.187 0.033 Endophytes, mycoparasites
42. Coleophoma cylindrospora (Desm.) Höhn Helotiales 0.010 Saprotroph
43. Collophorina sp. Leotiales 0.001 Saprotroph
44. Coniochaeta sp. Coniochaetales 0.015 0.002 Pathogens, saprotrophs, endophytes, coprophilous, mycoparasite, human pathogens
45. Cordyceps bassiana Z.Z. Li, C.R. Li, B. Huang & M.Z. Fan + C. brongniartii Shimazu Hypocreales 0.047 Enthomopathogenic, mycoparasite
46. Cosmospora berkeleyana  (P. Karst.) Gräfenhan, Seifert & Schroers Hypocreales 0.027 Saprotroph, pathogen, mycoparasite
47. Crocicreas sp. Helotiales 0.005 Saprotrophs
48. Cucurbitariaceae Pleosporales 0.076 Saprotrophs, pathogens
49. Cudoniella indica J. Webster, Eicker & Spooner Helotiales 0.002 Saprotroph
50. Cyathicula cyathoidea (Bull.) Thüm Helotiales 0.006 Saprotrophs
51. Cyphellophora sessilis (de Hoog) Réblová & Unter Chaetothyriales 0.001 Pathogen
52. Cytospora davidiana Y.L. Wang & X.Y. Zhang + C. leucostoma (Pers.) Sacc. + C. paratranslucens Norphanph., Bulgakov, T.C. Wen & K.D. Hyde + Cytospora sp. Diaporthales 0.012 13.720 Pathogens
53. Dactylaria dimorphospora Veenb.-Rijks Helotiales 0.016 Saprotroph
54. Dactylonectria torresensis  (A. Cabral, Rego & Crous) L. Lombard & Crous Hypocreales 0.008 Pathogen
55. Debaryomyces hansenii  (Zopf) Lodder & Kreger-van Rij Saccharomycetales 0.023 Pathogen
56. Dendryphion europaeum Crous & R.K. Schumach. + D. nanum (Nees) S. Hughes Pleosporales 0.268 0.006 Saprotroph
57. Dermateaceae Helotiales 0.002
58. Desmazierella acicola Lib. Pezizales 0.001 Saprotroph
59. Diaporthe cynaroidis  Marinc., M.J. Wingf.  & Crous + D. foeniculina (Sacc.) Udayanga & Castl. + D. helicis Niessl + D. novem J.M. Santos, Vrandečić & A.J.L. Phillips + D. rudis (Fr.) Nitschke + Diaporthe sp. Diaporthales 0.017 3.327 Pathogens, endophytes
60. Didymella macrostoma  (Mont.) Qian Chen & L. C + D. pedeiae (Aveskamp, Gruyter & Verkley) Qian Chen & L. Cai + D. pinodes (Berk. & A. Bloxam) Petr. + D. pomorum (Thüm.) Qian Chen & L. Cai Pleosporales 0.039 0.036 Pathogens
61. Didymosphaeria futilis (Berk. & Broome) Rehm Pleosporales 0.005 Saprotroph
62. Dissoconium eucalypti  Crous & Carnegie Capnodiales 0.001 Commensalist, mycoparasite
63. Dothideomycetes 0.018 0.014
64. Emericellopsis glabra (J.F.H. Beyma) Backus & Orpurt + E. minima Stolk Hypocreales 0.179 Endophytes
65. Endophoma elongata Tsuneda & M.L. Dave Incertae sedis 0.005
66. Epicoccum nigrum  Link Pleosporales 0.002 0.001 Endophyte, saprotroph, pathogen
67. Eurotiales Eurotiales 0.001
68. Eurotiomycetes 0.002 0.020
69. Exophiala capensis Crous + E. equina (Pollacci) de Hoog, V.A. Vicente, Najafz., Harrak, Badali & Seyedm. + E. opportunistica de Hoog, V.A. Vicente, Najafz., Harrak, Badali & Seyedm. + Exophiala sp. Chaetothyriales 0.129 0.031 Saprotrophs, human pathogens
70. Fusarium avenaceum  (Fr.) Sacc. + F. equiseti (Corda) Sacc. + F. fujikuroi Nirenberg + F. oxysporum Schltdl. + F. petersiae L. Lombard + F. redolens Wollenw. + F. solani (Mart.) Sacc. + F. torulosum (Berk. & M.A. Curtis) Gruyter & J.H.M. Schneid. + Fusarium sp.  + Neocosmospora solani (Mart.) L. Lombard & Crous Hypocreales 0.890 0.104 Pathogens
71. Fusicolla aquaeductuum  (Radlk. & Rabenh.) Gräfenhan, Seifert & Schroers +  F. merismoides (Corda) Gräfenhan, Seifert & Schroers Hypocreales 0.096 Pathogens
72. Gibellulopsis nigrescens (Pethybr.) Zare, W. Gams & Summerb Glomerellales 0.009 Saprotroph
73. Gliomastix murorum var. felina (Marchal) S. Hughes Hypocreales 0.023 Saprotroph
74. Graphium basitruncatum  (Matsush.) Seifert & G.Okada + G. penicillioides Corda Microascales 0.007 2.451 Saprotrophs, plant and human pathogens
75. Gaphostroma platystomum (Schwein.) Piroz. Xylariales 0.004 Saprotroph
76. Halenospora varia (Anastasiou) E.B.G. Jones + Halenospora sp. Helotiales 0.443 Saprotrophs, aquatic
77. Halokirschsteiniothelia maritima (Linder) Boonmee & K.D. Hyde Mytilinidiales 0.023 Saprotroph
78. Halosphaeria quadri-remis (Höhnk) Kohlm Microascales 0.007 Saprotroph
79. Halosphaeriaceae Microascales 0.008
80. Harzia acremonioides (Harz) Costantin + H. sphaerospora (Matsush.) D.W. Li & N.P. Schultes Melanosporales 0.028 Saprotrophs
81. Helicodendron luteoalbum Glen Bott + H. westerdijkiae Beverw Helotiales 0.009 Saprotrophs
82. Helicosporium sp. Tubeufiales 0.006 Saprotrophs
83. Helotiaceae Helotiales 0.005
84. Helotiales Helotiales 3.087 4.565
85. Hemibeltrania  sp. Amphisphaeriales 0.007 Pathogen
86. Herpotrichia pinetorum  (Fuckel) G. Winter + Herpotrichia sp. Pleosporales 0.183 0.002 Pathogens
87. Herpotrichiellaceae Chaetothyriales 0.004
88. Hyalodendriella betulae  Crous Helotiales 0.012 0.001 Saprotroph, pathogen
89. Hyalopeziza sp. Helotiales 0.014 Saprotroph
90. Hyaloscypha bicolor (Hambl. & Sigler) Vohník, Fehrer & Réblová Helotiales 0.012 Endophyte, saprotroph
91. Hyaloscyphaceae Helotiales 0.003 0.040
92. Hymenoscyphus caudatus  (P. Karst.) Dennis + H. imberbis (Bull.) Dennis Helotiales 0.007 0.017 Pathogens, saprotrophs
93. Hypocreales Hypocreales 2.979
94. Hypoxylon fragiforme (Pers.) J. Kickx f. Xylariales 0.469 0.002 Saprotroph, pathogen
95. Ilyonectria crassa  (Wollenw.) A. Cabral & Crous + I. cyclaminicola A. Cabral & Crous + I. destructans (Zinssm.) Rossman, L. Lombard & Crous + I. europaea A. Cabral, Rego & Crous + I. mors-panacis (A.A. Hildebr.) A. Cabral & Crous + I. robusta (A.A. Hildebr.) A. Cabral & Crous + Ilyonectria sp. + Cylindrocarpon sp. Hypocreales 2.031 6.710 Saprotrophs, pathogens
96. Infundichalara microchona (W. Gams) Réblová & W. Gams + I. minuta Koukol Helotiales 0.014 0.001 Saprotrophs, patogens, mycoparasitic
97. Jattaea taediosa (Sacc.) Réblová & Jaklitsch Calosphaeriales 0.005 Endophyte
98. Juxtiphoma eupyrena  Sacc. Pleosporales 0.001 Pathogen
99. Knufia cryptophialidica L.J. Hutchison & Unter. + K. peltigerae (Fuckel) Réblová & Unter Incertae sedis 0.006 0.015 Pathogens, lichenicolous
100. Lambertella tubulosa Abdullah & J. Webster Helotiales 1.445 Saprotroph
101. Lasiosphaeriaceae Sordariales 0.095 0.005
102. Lecania cyrtella (Ach.) Th. Fr. + L. naegelii (Hepp) Diederich & van den Boom Lecanorales 0.001 0.034 Lichenicolous
103. Lecanorales Lecanorales 0.001
104. Lemonniera terrestris Tubaki Helotiales 0.014 Saprotroph, aquatic
105. Leohumicola minima (de Hoog & Grinb.) Seifert & Hambl Helotiales 0.002 Saprotroph
106. Leotiomycetes 0.003 0.876
107. Lepraria caesiella R.C. Harris Lecanorales 0.002 Lichenicolous
108. Leptodontidium sp. Helotiales 0.011 0.254 Endophyte, mycorrhizal
109. Leptosphaeria sp. Pleosporales 0.023 Endophytes, saprotrophs, pathogens
110. Leptosphaerulina australis McAlpine Pleosporales 0.014 Endophyte
111. Lophiostoma corticola  (Fuckel) E.C.Y. Liew, Aptroot & K.D. Hyde + Lophiostoma sp. Pleosporales 0.788 Pathogens
112. Lophodermium pinastri  (Schrad.) Chevall. + L. seditiosum Minter, Staley & Millar + Lophodermium sp. Rhytismatales 0.107 0.003 Pathogens
113. Lophotrichus sp. Microascales 0.017 Patogen, coprophilus, human pathogen
114. Macroconia sphaeriae (Fuckel) Gräfenhan & Schroers Hypocreales 0.013 Saprotroph, mycoparasitic
115. Magnohelicospora fuscospora (Linder) R.F. Castañeda, Hern.-Restr. & Gené Incertae sedis 0.269 Saprotroph
116. Massarina sp. Pleosporales 0.002 Saprotroph
117. Megacapitula villosa J.L. Chen & Tzean Incertae sedis 0.001 Saprotroph
118. Melanospora kurssanoviana (Beliakova) Czerepan Melanosporales 0.009 Saprotroph, mycoparasitic
119. Metarhizium marquandii (Massee) Kepler, S.A. Rehner & Humber Hypocreales 0.495 Endophyte
120. Meyerozyma guilliermondii (Wick.) Kurtzman & M. Suzuki Saccharomycetales 0.003 0.022 Coprophilous, human pathogen
121. Micarea adnata Coppins Lecanorales 0.006 Lichenicolous
122. Microascaceae Microascales 0.002
123. Microdochium sp. Amphisphaeriales 0.063 0.001 Pathogen
124. Microthecium fimicola (E.C. Hansen) Y. Marín, Stchigel, Guarro & Cano + M. quadrangulare (Dania García, Stchigel & Guarro) Y. Marín, Stchigel, Guarro & Cano Melanosporales 0.012 0.002 Saprotrophs
125. Minutisphaera parafimbriatispora Raja, Oberlies, Shearer & A.N. Mill Minutisphaerales 0.017 Saprotroph, aquatic
126. Mollisia sp. Helotiales 0.021 Saprotroph
127. Monographella nivalis  (Schaffnit) E. Müll Amphisphaeriales 0.004 Pathogen
128. Montagnulaceae Pleosporales 0.005 Saprotrophs, endophytes, pathogens
129. Mycofalcella calcarata Marvanová, Om-Kalth. & J. Webster Helotiales 0.002 Saprotroph, aquatic
130. Myco sphaerella tassiana  (De Not.) Johanson Capnodiales 0.008 Pathogen, saprotroph
131. Myrmecridium schulzeri (Sacc.) Arzanlou, W. Gams & Crous Myrmecridiales 0.010 Saprotroph
132. Naevala perexigua (Roberge ex Desm.) K. Holm & L. Holm Helotiales 0.001 Saprotroph
133. Nakazawaea anatomiae (Zwillenb.) Kurtzman & Robnett + N. populi (Hagler, Mend.-Hagler & Phaff) Kurtzman & Robnett Saccharomycetales 0.016 12.941 Saprotrophs
134. Nectria sp. Hypocreales 0.032 Pathogens, saprotrophs
135. Nectriaceae Hypocreales 0.432
136. Neoascochytaexitialis  (Morini) Qian Chen & L. Cai Pleosporales 0.012 Pathogen
137. Neobulgaria premnophila Roll-Hansen & H. Roll-Hansen + N. pura (Pers.) Petr. + Neobulgaria sp. Helotiales 0.684 Saprotrophs
138. Neocatenulostroma germanicum (Crous & U. Braun) Quaedvl. & Crous Capnodiales 0.001 Pathogen
139. Neocucurbitaria cava (Schulzer) Gruyter, Aveskamp & Verkley Pleosporales 0.002 Saprotroph
140. Neofabraea perennans Kienholz Helotiales 0.009 Pathogen
141. Neolepto sphaeria rubefaciens (Togliani) Gruyter, Aveskamp & Verkley Pleosporales 0.003 Pathogen
142. Neonectria candida (Ehrenb.) Rossman, L. Lombard & Crous + Neonectria sp. Hypocreales 0.560 0.763 Pathogen
143. Neopyrenochaeta acicola ((Moug. & Lév.) Valenz.-Lopez, Crous, Stchigel, Guarro & Cano  + N. inflorescentiae (Crous, Marinc. & M.J. Wingf.) Valenz.-Lopez, Crous, Stchigel, Guarro & Cano Pleosporales 0.014 0.058 Pathogens, saprotrophs
144. Neosetophoma clematidis Wijayaw., Camporesi & K.D. Hyde Pleosporales 0.046 Saprotroph
145. Neurospora terricola Goch. & Backus Sordariales 0.004 Saprotroph
146. Niesslia mucida (W. Gams) W. Gams & Stielow Hypocreales 0.004 Saprotroph
147. Nigrograna mycophila Jaklitsch, Friebes & Voglmayr Pleosporales 0.007 Saprotroph, mycoparasitic
148. Nigro spora oryzae (Berk. & Broome) Petch Incertae sedis 0.535 Saprotroph, pathogen
149. Ochrocladosporium elatum (Harz) Crous & U. Braun Pleosporales 0.022 0.084 Endophyte
150. Oedocephalum nayoroense Ts. Watan Pezizales 0.049 Saprotroph
151. Onygenales Onygenales 0.005
152. Ophiostomataceae Ophiostomatales 0.790 Pathogens
153. Orbilia auricolor (A. Bloxam) Sacc. Orbiliales 0.026 Saprotroph
154. Orbiliaceae Orbiliales 0.006
155. Pachyramichloridium pini (de Hoog & Rahman) C. Nakash., Videira & Crous Capnodiales 0.017 Pathogen
156. Papulaspora pisicola J.F.H. Beyma Incertae sedis 0.019 Saprotroph
157. Paraphoma chrysanthemicola (Hollós) Gruyter, Aveskamp & Verkley + P. radicina (McAlpine) Morgan-Jones & J.F. White + Paraphoma sp. Pleosporales 4.852 Saprotrophs, pathogens
158. Penicillium citreonigrum Dierckx + P. citreosulfuratum Biourge + P. georgiense S.W. Peterson & B.W. Horn + P. glandicola (Oudem.) Seifert & Samson + P. halotolerans Frisvad, Houbraken & Samson + P. lapidosum Raper & Fennell + P. nothofagi Houbraken, Frisvad & Samson + P. raphiae Houbraken, Frisvad & Samson + P. roseomaculatum Biourge + P. sacculum E. Dale + P. unicum Tzean, J.L. Chen & Shiu + P. virgatum Nirenberg & Kwaśna + Penicillium sp. + Talaromyces luteus C.R. Benj. Eurotiales 0.295 0.001 Saprotrophs
159. Periconia sp. Pleosporales 0.012 Endophyte
160. Petriella sordida (Zukal) G.L. Barron & J.C. Gilman Microascales 0.001 Coprophilous
161. Phacidium lacerum Fr. + Phacidium sp. Phacidiales 0.027 Saprotroph
162. Phaeoacremonium cinereum Gramaje, Mohammadi, Banihash., Armengol & L. Mostert + P. hungaricum Essakhi, Mugnai, Surico & Crous Togniniales 0.044 Pathogens
163. Phaeoisaria loranthacearum Crous & R.K. Schumach. + P. sparsa B. Sutton Xylariales 0.347 Saprotrophs, coprophilous
164. Phaeomoniella sp. Phaeomoniellales 0.001
165. Phaeosphaeria sp. Pleosporales 0.007 Pathogens
166. Phaeosphaeriaceae Pleosporales 0.013
167. Phaeosphaeriopsis sp. Pleosporales 0.032 Pathogens, saprotrophs
168. Phialocephala sp. Helotiales 0.004 Saprotrophs
169. Phialophora sp. Chaetothyriales 10.291 Saprotrophs, pathogens
170. Phoma boeremae Gruyter + Phoma sp. Pleosporales 0.010 0.007 Saprotrophs, pathogens
171. Phomopsis phaseoli (Desm.) Sacc. + P. velata (Sacc.) Traverso + Phomopsis sp. Diaporthales 1.186 Pathogens, saprothrophs endophytes
172. Physcia tenella (Scop.) DC. Caliciales 0.001 Lichenicolous
173. Pilophorus strumaticus Nyl. ex Cromb Lecanorales 0.001 Lichenicolous
174. Plagiostoma jonesii Senan. & K.D. Hyde Diaporthales 0.031 Saprotroph, endophyte
175. Plectosphaerella cucumerina (Lindf.) W. Gams + P. niemeijerarum L. Lombard Glomerellales 0.140 0.014 Pathogens
176. Pleosporaceae Pleosporales 0.003
177. Pleosporales Pleosporales 0.161 0.504
178. Pleotrichocladium opacum (Corda) Hern.-Restr., R.F. Castañeda & Gené Pleosporales 0.307 0.013 Saprotroph, aquatic
179. Pleurophoma ossicola Crous, Krawczynski & H.-G. Wagner + Pleurophoma sp. Xylariales 0.016 0.005 Saprotroph
180. Podospora appendiculata (Auersw. ex Niessl) Niessl + P. bulbillosa (W. Gams & Mouch.) X. Wei Wang & Houbraken. + P. leporina (Cain) Cain + Podospora sp. Sordariales 0.074 Saprotroph, coprophilous
181. Preussia flanaganii Boylan + P. typharum (Sacc.) Cain Pleosporales 0.058 Saprotrophs, endophytes, coprophilous
182. Pseudeurotium hygrophilum (Sogonov, W. Gams, Summerb. & Schroers) Minnis & D.L. Lindner + P. ovale Stolk + P. zonatum J.F.H. Beyma Thelebolales 0.804 Saprotrophs, human pathogens
183. Pseudocercospora angolensis (T. Carvalho & O. Mendes) Crous & U. Braun Mycosphaerellales 0.004 Pathogen
184. Pseudogymnoascus pannorum (Link) Minnis & D.L. Lindner + P. roseus Raillo Thelebolales 0.068 Saprotrophs
185. Pyrenochaeta sp. Incertae sedis 0.105 0.005 Pathogen, saprotroph
186. Pyrenochaetopsis leptospora (Sacc. & Briard) Gruyter, Aveskamp & Verkley + P. microspora (Gruyter & Boerema) Gruyter, Aveskamp & Verkley Pleosporales 0.007 0.001 Pathogens, saprotrophs, endophytes
187. Pyronemataceae Pezizales 0.081
188. Saccharomyces cerevisiae (Desm.) Meyen Saccharomycetales 0.001 Saprotroph
189. Schizothecium glutinans (Cain) N. Lundq Sordariales 0.015 Saprotroph, coprophilous
190. Scolecobasidium constrictum E.V. Abbott + S. umbrinum (Ach.) Arnold Incertae sedis 0.016 0.002 Saprotrophs, endophytes
191. Scutellinia scutellata (L.) Lambotte Pezizales 0.005 Saprotroph
192. Scytalidium lignicola Pesante + S. multiseptatum Hol.-Jech Helotiales 0.055 0.001 Pathogens, saprotrophs, mycoparasitic
193. Sordariales 0.008
194. Sordariomycetes 0.211 0.003
195. Sphaeropsis sapinea (Fr.) Dyko & B. Sutton Botryosphaeriales 0.003 Pathogen
196. Sporormiaceae Pleosporales 0.003
197. Sporothrix dentifunda Aghayeva & M.J. Wingf. + S. stenoceras (Robak) Z.W. de Beer, T.A. Duong & M.J. Wingf. + S. narcissi (Limber) Z.W. de Beer, T.A. Duong & M.J. Wingf Ophiostomatales 0.161 0.001 Pathogens, saprotrophs
198. Stemphylium herbarum E.G. Simmons + S. majusculum E.G. Simmons + S. vesicarium (Wallr.) E.G. Simmons Pleosporales 0.027 Pathogens
199. Subramaniula flavipila X. Wei Wang & Samson Sordariales 0.014 Saprotroph
200. Sydowia polyspora (Bref. & Tavel) E. Müll Dothideales 0.004 1.028 Pathogen, endophyte, saprotroph
201. Tetracladium furcatum Descals + T. setigerum (Grove) Ingold + Tetracladium sp. Helotiales 1.171 0.862 Saprotrophs
202. Thelonectria blackeriella + T. olida (Wollenw.) Wollenw. + T. nodosa Salgado & P. Chaverri Hypocreales 0.012 0.006 Pathogens
203. Tricharina sp. Pezizales 1.55 Saprotrophs
204. Trichocladium asperum Harz + T. griseum (Traaen) X. Wei Wang & Houbraken Sordariales 0.593 Saprotrophs
205. Trichoderma aerugineum Jaklitsch + T. hamatum (Bonord.) Bainier + T. koningiopsis Samuels, Carm. Suárez & H.C. Evans + T. martiale Samuels + T. neokoningii Samuels & Soberanis + T. piluliferum J. Webster & Rifai + T. Polysporum (Link) Rifai + T. pubescens Bissett + T. stilbohypoxyli Samuels & Schroers + T. viride Pers. + Trichoderma sp. Hypocreales 19.464 0.001 Saprotrophs
206. Tricladium splendens Ingold Helotiales 0.040 0.057 Saprotroph, acquatic
207. Truncatella an gustata (Pers.) S. Hughes + T. restionacearum S.J. Lee & Crous Amphisphaeriales 0.003 0.001 Pathogens
208. Valsa malicola Z. Urb. + V. sordida Sacc. + V. leucostoma (Pers.) Fr. Diaporthales 0.012 0.214 Pathogens
209. Valsaceae Diaporthales 0.003
210. Venturia hystrioides (Dugan, R.G. Roberts & Hanlin) Crous & U. Braun Venturiales 0.018 Pathogen
211. Venturiaceae sp. Venturiales 0.001
212. Verticillium dahliae Kleb. + V. longisporum (C. Stark) Karapapa, Bainbr. & Heale Glomerellales 0.029 Pathogens, saprotrophs
213. Volutella ciliata (Alb. & Schwein.) Fr. + Volutella sp. Hypocreales 0.009 0.009 Saprotrophs, pathogen
214. Xanthoparmelia subchalybaeizans (Hale) G. Amo, A. Crespo, Elix & Lumbsch Lecanorales 0.005 Lichenicolous
215. Xenochalara sp. Helotiales 0.033 Saprotroph
216. Xenopolyscytalum pinea Crous + Xenopolyscytalum sp. Helotiales 0.001 0.001 Saprotrophs
217. Xenoramularia arxii Videira, Crous & U. Braun Capnodiales 0.001 Pathogen
218. Xylariales Xylariales 0.061
219. Yamadazyma mexicana (M. Miranda, Holzschu, Phaff & Starmer) Billon-Grand Saccharomycetales 0.039 Saprotroph
220. Yarrowia lipolytica (Wick., Kurtzman & Herman) Van der Walt & Arx Saccharomycetales 0.001 Saprotroph
221. Zalerion sp. Lulworthiales 0.001 Saprotroph, aquatic
222. Zopfiella marina Furuya & Udagawa + Z. pilifera Udagawa & Furuya Sordariales 0.027 Saprotrophs, aquatic
Frequency of Ascomycota 45.299 68.697
Number of taxa Ascomycota 263 178
Basidiomycota
1. Aecidium sp. Pucciniales 0.034 Pathogen
2. Agaricales 0.054
3. Agaricomycetes 0.008 0.074
4. Agaricostilbomycetes 0.001
5. Apiotrichum dulcitum (Berkhout) Yurkov & Boekhout + A. gracile (Weigmann & A. Wolff) Yurkov & Boekhout Trichosporonales 0.047 Saprotrophs
6. Armillaria mellea (Vahl) P. Kumm Agaricales 0.025 Pathogen
7. Athelia acrospora Jülich Atheliales 0.001 Saprotroph
8. Atheliaceae Atheliales 0.023
9. Aurantiporus fissilis (Berk. & M.A. Curtis) H. Jahn ex Ryvarden Polyporales 0.002 Saprotroph, pathogen
10. Auriculariales 0.004
11. Basidiomycota 0.031 0.038
12. Bensingtonia sp. Agaricostilbales 0.001 Saprotroph
13. Bjerkandera adusta (Willd.) P. Karst Polyporales 0.002 Saprotroph, pathogen
14. Buckleyzyma aurantiaca (Saito) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout Buckleyzymales 0.048 0.007 Saprotroph
15. Bullera crocea Buhagiar Tremellales 0.008 0.001 Saprotroph
16. Bulleromyces albus Boekhout & Á. Fonseca Tremellales 0.001 0.001 Saprotroph
17. Burgoa anomala (Hotson) Goid Cantharellales 0.009 Saprotroph
18. Camarophyllus sp. Agaricales 0.001 Mycorrhizal
19. Cantharellales 0.002
20. Chondrostereum purpureum (Pers.) Pouzar Agaricales 0.018 Pathogen, saprotroph
21. Coprinellus disseminatus (Pers.) J.E. Lange Agaricales 0.230 Saprotroph
22. Cryptococcus tephrensis Vishniac + Cryptococcus sp. Tremellales 0.220 0.406 Saprotrophs, endophytes
23. Curvibasidium pallidicorallinum Golubev, Fell & N.W. Golubev Incertae sedis 0.001 Mycocinogenic
24. Cystobasidiomycetes 0.003
25. Cystobasidium pinicola (F.Y. Bai, L.D. Guo & J.H. Zhao) Yurkov, Kachalkin, H.M. Daniel, M. Groenew., Libkind, V. de Garcia, Zalar, Gouliam., Boekhout & Begerow + C. psychroaquaticum A.M. Yurkov, Kachalkin, H.M. Daniel, M. Groenew., Libkind, V. de Garcia, Zalar, Gouliamova, Boekhout & Begerow Cystobasidiales 0.002 0.016 Saprotrophs, mycoparasitic
26. Cystofilobasidiales Cystofilobasidiales 0.004 0.001
27. Cystofilobasidium infirmominiatum (Fell, I.L. Hunter & Tallman) Hamam., Sugiy. & Komag. + C. macerans J.P. Samp. Cystofilobasidiales 0.012 0.001 Saprotrophs, acquatic
28. Daedaleopsis confragosa (Bolton) J. Schröt Polyporales 0.001 Saprotroph
29. Efibulobasidium sp. Sebacinales 0.020 Mycorrhizal
30. Entyloma gaillardianum Vánky + E. polysporum (Peck) Farl. Entylomatales 0.044 Pathogens
31. Erythrobasidiales Erythrobasidiales 0.001 0.001
32. Erythrobasidium hasegawae (Y. Yamada & Komag.) Hamam., Sugiy. & Komag Erythrobasidiales 0.008 Saprotroph
33. Exidiopsis sp. Auriculariales 0.001 Saprotroph
34. Exobasidium arescens Nannf. + Exobasidium sp. Exobasidiales 0.001 0.001 Pathogen
35. Fellomyces sp. Tremellales 0.001 Saprotroph
36. Fellozyma inositophila (Nakase & M. Suzuki) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout Incertae sedis 0.007 Saprotroph
37. Fibulobasidium inconspicuum Bandoni Tremellales 0.004 0.379 Saprotroph
38. Filobasidium wieringae (Á. Fonseca, Scorzetti & Fell) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout Filobasidiales 0.008 Saprotroph
39. Fomitopsis pinicola (Sw.) P. Karst Polyporales 0.005 Pathogen, saprotroph
40. Geotrichopsis mycoparasitica Tzean & Estey Incertae sedis 0.033 Mycoparasitic
41. Gymnopus androsaceus (L.) Della Magg. & Trassin Agaricales 0.001 Saprotroph, mycoparasitic
42. Hannaella zeae (O. Molnár & Prillinger) F.Y. Bai & Q.M. Wang Tremellales 0.047 Saprotroph, endophyte
43. Hebeloma mesophaeum (Pers.) Quél Agaricales 0.007 Mycorrhizal
44. Hydnaceae Cantharellales 0.004
45. Hygrophoraceae Agaricales 0.008
46. Hymenogaster arenarius Tul. & C. Tul. Agaricales 0.005 Ectomycorrhizal
47. Hyphodontia pallidula (Bres.) J. Erikss Hymenochaetales 0.003 Saprotroph
48. Hypochnicium lundellii (Bourdot) J. Erikss Polyporales 0.012 Saprotroph
49. Inocybe curvipes P. Karst Agaricales 0.043 Ectomycorrhizal
50. Itersonilia perplexans  Derx Cystofilobasidiales 0.001 Pathogen
51. Kockovaella machilophila Cañ.-Gib., M. Takash., Sugita &  Nakase Tremellales 0.001
52. Kondoa yuccicola (Nakase & M. Suzuki) Q.M. Wang, M. Groenew., F.Y. Bai & Boekhout Agaricostilbales 0.012 Saprotroph
53. Kwoniella newhampshirensis K. Sylvester, Q.M. Wang & Hittinger + K. pini (Golubev & I. Pfeiff.) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout Tremellales 0.016 0.003 Entomopathogenic
54. Laccaria sp. Agaricales 0.001 Ectomycorrhizal
55. Lachnella alboviolascens (Alb. & Schwein.) Fr. Agaricales 0.007 Saprotroph
56. Leptosporomyces galzinii (Bourdot) Jülich Atheliales 0.054 Saprotroph
57. Leucosporidiales Leucosporidiales 0.007
58. Malassezia globosa Midgley, E. Guého & J. Guillot + M. restricta E. Guého, J. Guillot & Midgley + Malasseziales 0.016 0.001 Human pathogens
59. Marasmius cohaerens (Pers.) Cooke & Quél Agaricales 0.008 Saprotroph
60. Microbotryomycetes 0.042
61. Minimedusa polyspora (Hotson) Weresub & P.M. LeClair Cantharellales 0.069 Saprotroph, mycoparasitic
62. Mrakia frigida (Fell, Statzell, I.L. Hunter & Phaff) Y. Yamada & Komag. + Mrakia sp. Cystofilobasidiales 0.012 0.001 Saprotroph
63. Mycena aurantiomarginata (Fr.) Quél. + M. galericulata (Scop.) Gray Agaricales 0.003 0.001 Saprotroph
64. Naganishia cerealis (Passoth, A.-C. Andersson, Olstorpe, Theelen, Boekhout & Schnürer) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout + N. diffluens (Zach) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout Tremellales 0.021 0.001 Saprotroph
65. Oberwinklerozyma silvestris Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout Incertae sedis 0.012
66. Oliveonia sp. Auriculariales 0.008 Saprotroph
67. Peniophora sp. Russulales 0.593 Pathogen, saprotroph
68. Phaeotremella frondosa (Fr.) Spirin & V. Malysheva + P. roseotincta (Lloyd) V. Malysheva Tremellales 0.001 0.123 Saprotrophs, mycoparasites
69. Phloeomana speirea (Fr.) Redhead Agaricales 0.024 Saprotroph, aquatic
70. Piskurozyma sp. Filobasidiales 0.024 Saprotroph
71. Psathyrella squamosa (P. Karst.) A.H. Sm. Agaricales 0.004 Saprotroph
72. Rhodotorula glutinis (Fresen.) F.C. Harrison + Rhodotorula sp. Sporidiobolales 0.003 0.001 Saprotrophs
73. Saitozyma podzolica (Babeva & Reshetova) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout Tremellales 0.001 Saprotroph
74. Sakaguchia lamellibrachiae (Nagah., Hamam., Nakase & Horikoshi) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout Sakaguchiales 0.027 Saprotroph
75. Sebacinales Sebacinales 0.392 0.001
76. Serendipita vermifera Oberw Sebacinales 0.017 Endophyte, mycorrhizal
77. Serpula himantioides (Fr.) P. Karst Boletales 0.001 Saprotroph, pathogen
78. Sirotrema translucens (H.D. Gordon) Bandoni Tremellales 0.001 Saprotroph
79. Sistotremastrum sp. Trechisporales 0.001 Saprotroph
80. Slooffia pilatii (F.H. Jacob, Faure-Reayn. & Berton) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout Incertae sedis 0.001 Saprotroph
81. Solicoccozyma fuscescens (Golubev) Yurkov + S. phenolica (Á. Fonseca, Scorzetti & Fell) A.M. Yurkov + S. terrea (Di Menna) A.M. Yurkov + S. terricola (T.A. Pedersen) Yurkov Filobasidiales 2.451 0.004 Saprotrophs
82. Sporobolomyces roseus Kluyver & C.B. Niel + Sporobolomyces sp. 0.008 0.001
83. Stilbum sp. Agaricostilbales 0.018 Saprotroph
84. Symmetrospora coprosmae (Hamam. & Nakase) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout + S. gracilis (Derx) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout Incertae sedis 0.005 0.001 Saprotrophs
85. Tausonia pullulans (Lindner) Xin Zhan Liu, F.Y. Bai, J.Z. Groenew. & Boekhout Cystofilobasidiales 0.094 0.012 Saprotrophs
86. Thelephoraceae Thelephorales 0.058 Pathogens
87. Tomentella sp. Thelephorales 0.001 Ectomycorrhizal
88. Tremella encephala Pers. Tremellales 0.003 Saprotroph
89. Tremellales 0.014 0.001 Saprotrophs
90. Tremellomycetes 0.003
91. Tricholomataceae Agaricales 0.004
92. Trichosporon otae Sugita, Takshima & Kikuchi Trichosporonales 0.003 Human pathogen
93. Tulasnellaceae Cantharellales 0.005
94. Typhula incarnata Lasch Agaricales 0.004 Pathogen
95. Pappia fissilis (Berk. & M.A. Curtis) Zmitr Polyporales 0.004 Saprotroph
96. Vishniacozyma carnescens (Verona & Luchetti) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout + V. globispora (B.N. Johri & Bandoni) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout + V. victoriae (M.J. Montes, Belloch, Galiana, M.D. García, C. Andrés, S. Ferrer, Torr.-Rodr. & J. Guinea) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout Tremellales 0.007 0.005 Pathogens, saprotrophs
Frequency Basidiomycota 4.119 2.076
Number of Basidiomycota taxa 81 59
Frequency
Oomycota 1.199 0.002
Culturable fungi 53.062 70.780
Non-culturable fungi 25.645 17.435
Other Kingdoms 15.822 11.728
No sequence in NCBI database 4.272 0.055
Number
Total OTUs 69,467 a 70,218 a
Culturable fungal OTUs 44,506 a 53,592 a
Taxa 474 a 309 a
Fungal taxa 364 a 242 a
Margalef’s diversity index–DMg 65.54 21.72
Shannon’s diveristy index–H 2.55 0.77
Simpson’s diversity index–D 0.21 0.74
Shannon’s evenness index–E 0.39 0.17
Berger-Parker’s dominance index–d 0.20 0.46
graphic file with name plants-10-00892-i001.jpg

Percentage of variation. Pathogens are in bold. a Indicates a statistically significant difference according to a χ2-test, p < 0.001.