Table 3.
Cryptosporidium parvum gp60 sequences generated in this study.
| Species (No. of Patients) | Subtype Family (No. of Patients) | Subtype (No. of Patients) | GenBank Acc. No. 1 | Origin of Infection (No. of Patients) |
|---|---|---|---|---|
| C. parvum (299) | IIa (164) | IIaA13G2R1 (2) | KU852706 | Turkey (1) |
| KU852701 | Morocco (1) | |||
| IIaA13R1 (1) | KU852702 | Sweden (1) | ||
| IIaA14G1R1 (13) | JQ030882 | Cyprus (1) Georgia (2) Sweden (3) | ||
| JX183798 (IIaA14G1R1b) | Sweden (7) | |||
| IIaA14G1R1r1 (6) | KU852703 | Sweden (4) Spain (1) Uzbekistan (1) | ||
| IIaA14G2R1 (1) | KF128738 | Greece (1) | ||
| IIaA14R1 (2) | JX183797 | Estonia (1) Sweden (1) | ||
| IIaA15G1R1 (6) | AM937012 | Sweden (4) unknown (1) | ||
| KU852704 (IIaA15G1R1_variant) | Sweden (1) | |||
| IIaA15G2R1 (31) | AF164490 | Dominican Republic (1) France (1) Mexico (1) Portugal (9) Portugal/Spain (1) Sweden (16) Venezuela (1) unknown (1) | ||
| IIaA16G1R1 (42) | EU647727 (IIaA16G1R1b) | Georgia (1) Italy (1) Serbia (1) Spain (6) Sweden (30 2) | ||
| KU852707 | unknown (1) | |||
| KT895368 (IIaA16G1R1b_variant) | Austria (1) Sweden (1) | |||
| IIaA16G2R1 (3) | DQ192505 | Sweden (3) | ||
| IIaA16G3R1 (2) | DQ192506 | Portugal (1) Sweden (1) | ||
| IIaA16R1 (1) | AM937010 | Malta (1) | ||
| IIaA17G1R1 (20) | GQ983359 | Poland (1) Sweden (1) | ||
| JX183801 (IIaA17G1R1c) | Italy (1) Sweden (11) South Africa (1) | |||
| AF403168 (IIaA17G1R1c_variant) | Sweden (5) | |||
| IIaA17R1 (1) | JX183800 | Sweden (1) | ||
| IIaA18G1R1 (12) | HQ005742 | Finland (1) | ||
| KF289038 (IIaA18G1R1b) | Sweden (2) | |||
| KT895369 (IIaA18G1R1b_variant) | Portugal (1) Sweden (3) | |||
| JX183803 (IIaA18G1R1d) | United Kingdom (1) Sweden (4) | |||
| IIaA18R1 (1) | KU852705 | Sweden (1) | ||
| IIaA19G1R1 (3) | KC679056 | Spain (1) Sweden (2) | ||
| IIaA19G2R1 (1) | DQ630514 | Mexico (1) | ||
| IIaA20G1R1 (4) | KC995127 | Croatia (1) Italy (1) Sweden (1) unknown (1) | ||
| IIaA21G1R1 (5) | FJ917373 | Sweden (5) | ||
| IIaA22G1R1 (5) | JX183806 | Sweden (4) unknown (1) | ||
| IIaA23G1R1 (2) | KC995126 | Sweden (2) | ||
| IId (118) | IIdA16G1 (5) | FJ917372 | Sweden (1) | |
| JX183808 (IIdA16G1b) | Spain (1) Sweden (3) | |||
| IIdA17G1 (4) | KU852708 | Italy (1) Norway (1) Spain (1) Sweden (1) | ||
| IIdA18G1 (3) | AY738194 | France (1) | ||
| KU852709 | Africa (1) Sweden (1) | |||
| IIdA19G1 (16) | DQ280496 | China (1) Morocco (2) Oman (1) Portugal (5) Sweden (2) Sweden/Portugal (1) | ||
| KU852711 | Sweden (3) | |||
| KU852713 | Sweden (1) | |||
| IIdA20G1 (24) | AY738185 (IIdA20G1b) | Israel (1) | ||
| JQ028866 (IIdA20G1e) | Sweden (20) | |||
| KU852711 | Croatia (1) Sweden (1) | |||
| KU852713 | Croatia (1) | |||
| IIdA21G1 (3) | DQ280497 | Portugal (1) Sweden (2) | ||
| IIdA22G1 (37) | AY166806 | Spain (1) Sweden (15) | ||
| FJ917374 (IIdA22G1c) | Estonia (1) Greece (1) Sweden (15) Sweden/US (1) unknown (1) | |||
| KR349103 | France (1) Sweden (1) | |||
| IIdA23G1 (5) | FJ917376 | Ivory Coast (1) Sweden (4) | ||
| IIdA24G1 (14) | JQ028865 | Denmark (1) Germany (1) Sweden (11 3) | ||
| JX183810 (IIdA24G1c) | Sweden (1) | |||
| IIdA25G1 (6) | JX043492 | Sweden (6) | ||
| IIdA29G1 (1) | GU458803 | Sweden (1) | ||
| IIc (2) | IIcA5G3a (1) | AF164491 | Germany (1) | |
| IIcA5G3j (1) | HQ005749 | Sweden (1) | ||
| IIe (2) | IIeA10G1 (1) | KM539058 | Guinea (1) | |
| IIeA13G1 (1) | KU852716 | Sweden (1) | ||
| IIl (1) | IIlA16R2 (1) | AM937007 | Europe/Asia (1) | |
| IIn (2) | IInA10 (2) | KU852717 | Tanzania/Sweden (1) Tanzania (1) | |
| IIr (1) | IIrA5G1 (1) | KU852719 | Sweden (1) | |
| IIs (1) | IIsA10G1 (1) | KU852720 | Sweden (1) | |
| IIt (1) | IItA13R1 (1) | KU852718 | Tanzania (1) | |
| Mixed subtypes | IIa + IIa (1) | IIaA14G2R1 + IIaA15G2R1 (1) | KF128738, KF128738 | Italy (1) |
| Mixed subtypes | IIa + IId (2) | IIaA15G2R1 + IIdA19G1 (2) | AF164490, JF691561 | Portugal (2) |
| C. parvum + C. hominis (1) | Ia + IIa (1) | IaA18R3 + IIaA16R1 (1) | KM538987, AM937010 | Syria (1) |
| neg gp60 PCR (4) | Sweden (4) |