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. 2021 May 24;22:379. doi: 10.1186/s12864-021-07666-3

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Assemblytics output plots showing six classes of structural variants between the Thalassiosira pseudonana reference genome and the final polished de novo long-read Flye assembly (a) and the Phaeodactylum tricornutum reference genome and the final polished de novo long-read Canu assembly (b). Dot plots comparing the Thalassiosira pseudonana reference chromosome-level scaffolds and unanchored contigs to the Flye assembly contigs (c) and the Phaeodactylum tricornutum chromosome-level scaffolds to the Canu assembly contigs (d) were also generated by Assemblytics