Table 2.
Performance of OASIS, ISEScan, ISEScan-fragments, ISsaga, and digIS on manually curated datasets
| Tool | TP | FN | FP | Se | FDR (%) |
|---|---|---|---|---|---|
| Dataset ISbrowser (N = 1192) | |||||
| OASIS | 791 | 401 | 77 | 0.66 | 8.87 |
| ISEScan | 925 | 267 | 94 | 0.78 | 9.22 |
| ISEScan-fragments | 1077 | 115 | 248 | 0.90 | 18.71 |
| ISsaga | 1135 | 57 | 363 | 0.95 | 24.23 |
| digIS | 979 | 213 | 194 | 0.82 | 16.54 |
| Dataset E. coli (N = 49) | |||||
| OASIS | 26 | 23 | 4 | 0.53 | 13.33 |
| ISEScan | 43 | 6 | 8 | 0.88 | 15.69 |
| ISEScan-fragments | 45 | 4 | 18 | 0.92 | 28.57 |
| ISsaga | 48 | 1 | 29 | 0.98 | 37.66 |
| digIS | 43 | 6 | 11 | 0.88 | 20.37 |
TP, FN, and FP represent the number of True Positives, False Negatives, and False Positives, respectively; Se is sensitivity; FDR is False Discovery Rate.