Table 1.
Gene Symbol | Gene Name | NCBI/Ensembl Accession Number | Oligo Sequence (5′–3′) | Amplicon Length (bp) | PCR Efficiency (%) | R2 Value | Reference |
---|---|---|---|---|---|---|---|
ATP1A1 | Equus caballus ATPase Na+/K+ transporting subunit alpha 1 | NM_001114532.2, XM_023640223.1, XM_023640224.1 | F: CTTGATGAACTTCAGCGCAAATA | 104 | 94 | 0.990 | This study |
R: GGTGTAAGGGCATTGGGA | |||||||
P: TGAGCCGAGGCTTAACAACTGCTC | |||||||
BAX | Equus caballus BCL2-associated X protein | XM_014729721.1 | F: AGGATGCGTCCACCAAGAAG | 80 | 93.2 | 0.994 | [37] |
XM_014729717.1 | R: CCTCTGCAGCTCCATGTTACTG | ||||||
P: CTCAAGCGCATCGGAGATGAGCTG | |||||||
BCL2 | Equus caballus B-cell lymphoma 2 | XM_001490436.2 | F: TTGGAAAGCCTACCACTAATTGC | 74 | 92.6 | 0.998 | [37] |
R: CCGTGTTTATAGGCACAGGAGAT | |||||||
P: CCCACCTGAGCGGCTCCACC | |||||||
CYP19A1 | Equus caballus cytochrome P450 family 19 subfamily A member 1 | NM_001081805.2 | F: GGAGAGGAAACGCTCGTTATTA | 107 | 99.2 | 0.999 | This study |
XM_005602588.2 | R: CCCATATACTGCAACCCAAATG | ||||||
XM_005602587.2 | P: ATCACTACTCCTCCCGATTTGGCA | ||||||
DNMT1 | Equus caballus DNA methyltransferase 1 | XM_014741825.1 | F: GACCACCATCACGTCTCATTT | 97 | 100.5 | 1 | This study |
R: CTCCTCATCCACAGAATTGTCC | |||||||
P: AAACGGAAACCCGAGGAAGAGCTG | |||||||
DNMT3A | Equus caballus DNA methyltransferase 3 α | XM_005600169.2 | F: GATTATTGACGAACGCACAAGAG | 112 | 100 | 0.998 | This study |
XM_005600168.2 | |||||||
XM_005600167.2 | |||||||
XM_005600170.2 | R: GTGTTCCAGGGTGACATTGA | ||||||
XM_005600171.2 | P: TGCAAATGTCTTCGATGTTCCGGC | ||||||
DNMT3B | Equus caballus DNA methyltransferase 3 β | XM_001916514.4 | F: CGAGTCTTGTCCCTGTTTGAT | 110 | 100.6 | 0.999 | This study |
R: GCGATAGACTCTTCACACACTT | |||||||
P: CGCCACAGGGTACTTGGTTCTCAA | |||||||
DNMT3L | Equus caballus DNA (cytosine-5-)-methyltransferase 3-like | XM_014736476.1 | F: GCCCTCACTTGGTTGGTTT | 98 | 100.5 | 0.999 | This study |
R: CTTCCACACAGGCACAGTTT | |||||||
P: CAAAGTGCCCATCTGCTCTGGAGA | |||||||
ESR1 | Equus caballus estrogen receptor 1 | NM_001081772.1 | F: CACCCAGGAAAGCTCCTATTT | 110 | 101.8 | 0.999 | This study |
R: CGAGATGACGTAGCCAACAA | |||||||
P: TCCACCATGCCCTCTACACATTTCC | |||||||
H19 | Equus caballus H19, imprinted maternally expressed transcript | NR_027326.2 | F: CCTCTAGCTCTGACTCAAGAATATG | 103 | 94.3 | 0.992 | This study |
R: CAGGTCCATCTGGTTCCTTTAG | |||||||
P: ACTCAGGAATCAGCTCTGGAAGGT | |||||||
IGF1 | Equus caballus insulin-like growth factor 1 | NM_001082498.2 | F: TGCTTCCGGAGCTGTGATCT | 67 | 102 | 1 | [34] |
XM_005606471.2 | |||||||
XM_005606472.2 | |||||||
XM_005606470.2 | R: CCGACTTGGCAGGCTTGA | ||||||
XM_005606469.2 | P: AGGAGGCTGGAGATGTACTGCGCACC | ||||||
IGF2 | Equus caballus insulin-like growth factor 2 | NM_001114539.2 | F: AAGTCCGAGAGGGACGTG | 100 | 99.9 | 0.998 | This study |
R: ATTGCTTCCAGGCGTTGT | |||||||
P: CCCGTGGTCAAGCTCTTCCAGT | |||||||
NANOG | Equus caballus Nanog homeobox | XM_014740545.1 | F: ACAGCCCCGATTCATCCA | 72 | 102.3 | 0.999 | [35] |
R: TCTTTGCCTCGCTCGTCTCT | |||||||
XM_001498808.1 | P: CAGTCCCAGAGTAAAACCGCTGCCC | ||||||
POU5F1 | Equus caballus POU class 5 homeobox 1 | XM_014734675.1 | F: CGGGCACTGCAGGAACAT | 73 | 100.8 | 0.999 | [35] |
R: CCGAAAGAGAAAGCGAACTAGTATTG | |||||||
XM_001490108.5 | P: TTCTCCAGGTTGCCTCTCACTCGGTTC | ||||||
PSMB4 | Equus caballus proteasome subunit beta type IV | XM_001492317.4 | F: CTTGGTGTAGCCTATGAAGCCC | 82 | 93.1 | 0.991 | [38] |
XM_005610132.1 | |||||||
XM_008515015.1 | |||||||
XM_005613704.1 | R: CCAGAATTTCTCGCAGCAGAG | ||||||
PTGES2 | Equus caballus prostaglandin-endoperoxide synthase 2 | NM_001081775.2 | F: GAGGTGTATCCGCCCACAGT | 81 | 92.3 | 0.996 | [36] |
R: AGCAAACCGCAGGTGCTC | |||||||
P: TCAGATGGAAATGATCTACCCGCCTCA | |||||||
SNRPD3 | Equus caballus small nuclear ribonucleoprotein D3 polypeptide. | XM_001489060.4 | F: ACGCACCTATGTTAAAGAGCATG | 120 | 99.4 | 0.996 | [38] |
XM_008511652.1 | R: CACGTCCCATTCCACGTC | ||||||
SOX2 | Equus caballus SRY box 2 | XM_003363345.3 | F: TGCGAGCGCTGCACAT | 91 | 99.3 | 0.998 | [35] |
R: AGCGTGTACTTATCCTTCTTCATGAG | |||||||
P: ATAAATACCGTCCTCGGCGGAAAACCAA |
R2: correlation coefficient of standard curve; F and R: forward and reverse primer; P: hydrolysis probe.