Table 2.
Analysis of the atomic interactions and packing. Number of hydrophobic and aromatic interactions, main chain-main chain hydrogen bonds and ionic interactions in Xyn11, CbXyn10C from Caldicellulosiruptor bescii (5OFJ), XynB from Paenibacillus barcinonensi (3EMC), CmXyn10B from Cellvibrio mixtus (2CNC) and SoXyn10A from Streptomyces olivaceoviridis (1V6Y). Compactness and percentage of exposed residues in the accessible surface area are also computed and shown. In each column, the two first-ranked proteins are shown in bold type, underlined number indicate the most favorable value.
| Atomic
Interactions and Packing |
||||||
|---|---|---|---|---|---|---|
| HYDROPHOBIC | AROMATIC | HYDROGEN BONDS (mch-mch) | IONIC | COMPACTNESS | EXPOSED CHARGED ASA (%) | |
| Xyn11 | 381 | 32 | 449 | 47 | 42.4 | 21.8 |
| CbXyn10C | 361 | 21 | 497 | 39 | 40.6 | 19.1 |
| PbXynB | 323 | 24 | 428 | 38 | 42.7 | 25.1 |
| CmXyn10B | 347 | 27 | 419 | 56 | 43.1 | 21.4 |
| SoXyn10A | 274 | 18 | 439 | 34 | 37.9 | 16.2 |