Table 3.
Annotations of genes within the region of chromosome II deleted in all the D. radiodurans recA isolates. Annotations have been obtained from the wt-1999 sequence on the basis of sequence homology.
| Gene coordinates (bp) in chr II of wt-1999 | Gene id | Gene product | COG functional class | COG functional class annotation |
|---|---|---|---|---|
| 186,398..187486 | DR_A0181 | GGDEF family protein | T | Signal transduction mechanisms |
| 187,602..188408 | DR_A0182 | Hypothetical protein | L | Replication, recombination and repair |
| 188,559..189953 | DR_A0183 | Hypothetical protein | R | General function prediction only |
| 190,143..191132 | DR_A0184 | Pyridoxamine kinase | H | Coenzyme transport and metabolism |
| 191,098..192645 | DR_A0185 | Exopolyphosphatase | FP | Nucleotide transport and metabolism; inorganic ion transport and metabolism |
| 192,795..193784 | DR_A0186 | Cytochrome P450, putative | Q | Secondary metabolites biosynthesis, transport and catabolism |
| 194,287..197055 | DR_A0188 | Excinuclease ABC subunit A | L | Replication, recombination and repair |
| 197,036..198550 | DR_A0189 | Ribosomal protein S12 methylthiotransferase | J | Translation, ribosomal structure and biogenesis |
| 198,551..200122 | DR_A0190 | Hypothetical protein | – | |
| 200,157..201089 | DR_A0191 | Hypothetical protein | G | Carbohydrate transport and metabolism |
| 201,063..201476 | DR_A0192 | Hypothetical protein | – | |
| 201,536..202249 | DR_A0193 | Phosphoglycerate mutase-like protein | G | Carbohydrate transport and metabolism |
| 202,242..203402 | DR_A0194 | Hypothetical protein | R | General function prediction only |
| 203,399..204235 | DR_A0195 | Short chain dehydrogenase/reductase family oxidoreductase | IQR | Lipid transport and metabolism; secondary metabolites biosynthesis, transport and catabolism; general function prediction only |
| 204,324..205571 | DR_A0196 | Acyl-CoA dehydrogenase | I | Lipid transport and metabolism |
| 205,568..205975 | DR_A0197 | Hypothetical protein | – | |
| 205,972..206466 | DR_A0198 | Hypothetical protein | Q | Secondary metabolites biosynthesis, transport and catabolism |
| 206,499..206960 | DR_A0199 | Nodulation protein N-like protein | I | Lipid transport and metabolism |
| 206,957..207733 | DR_A0200 | Gluconate 5-dehydrogenase | IQR | Lipid transport and metabolism; secondary metabolites biosynthesis, transport and catabolism; general function prediction only |
| 207,944..208807 | DR_A0201 | NAD synthetase | H | Coenzyme transport and metabolism |
| 208,882..210270 | DR_A0202 | Cu/Zn family superoxide dismutase | P | Inorganic ion transport and metabolism |
| 210,267..211598 | DR_A0203 | Oxidoreductase | G | Carbohydrate transport and metabolism |
| 211,623..212054 | DR_A0204 | Response regulator | T | Signal transduction mechanisms |
| 212,051..213649 | DR_A0205 | Sensor histidine kinase | T | Signal transduction mechanisms |
| 213,762..215597 | DR_A0206 | Oligoendopeptidase F | E | Amino acid transport and metabolism |
| 215,676..217316 | DR_A0207 | Hypothetical protein | S | Function unknown |
| 217,422..218531 | DR_A0208 | Peptide ABC transporter permease | EP | Amino acid transport and metabolism; inorganic ion transport and metabolism |
| 218,528..219514 | DR_A0209 | Peptide ABC transporter permease | EP | Amino acid transport and metabolism; inorganic ion transport and metabolism |
| 220,213..221475 | DR_A0210 | Peptide ABC transporter, periplasmic peptide-binding protein | E | Amino acid transport and metabolism |
| 221,435..222274 | DR_A0211 | GntR family transcriptional regulator | K | Transcription |
| 221,476..223224 | DR_A0212 | Hypothetical protein | O | Posttranslational modification, protein turnover, chaperones |