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. 2021 Mar 25;29(Suppl 1):441–453. doi: 10.3233/THC-218042

Table 1.

Software name and address

The name of the software Use function The URL
Protparam Physical and chemical analysis

https://web.expasy.org/protparam/

TMHMM Transmembrane analysis

http://www.cbs.dtu.dk/services/TMHMM/

ProtScale Hydrophobic analysis

https://web.expasy.org/cgi-bin/protscale/protscale.pl

SignalP 5.0 Signal peptide prediction

http://www.cbs.dtu.dk/services/SignalP/

NetPhos 3.1 server Prediction of phosphorylation sites

http://www.cbs.dtu.dk/services/NetPhos/

ProtComp v9.0 Subcellular localization

http://linux1.softberry.com/berry.phtml?topic=protcomppl

&group=programs&subgroup=proloc

COILS Coiled coil analysis

http://www.ch.embnet.org/software/COILS_form.html

SMART Structure domain analysis

http://smart.embl-heidelberg.de/

SOPMA Protein secondary structure prediction

https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?

page=npsa_sopma.html

SWISS-Model Protein tertiary structure prediction

http://www.swissmodel.expasy.org/interactive