Table 2.
Resistance genes and virulence factors detected by next-generation sequencing (NGS) analysis.
| Resistance Genes | ||||||
|---|---|---|---|---|---|---|
| Beta-Lactamase | Aminoglycoside | Heavy Metal | Quinolone | Efflux Systems and Regulator Systems | ||
| Gene alleles | blaKPC-3,blaCTX-M-15, blaOXA-1, blaSHV-76, blaTEM-1 | aac3 lla-c2, aac6p Ib-b-cr, aph3pp Ib-2, aph6 Id-1 | pcoA-2, pcoB-3, pcoC-1, pcoD-2, pcoE-1, pcoR-1, pcoS-2, silC-3, silE-3, silR-2, silS-2 | gyrA-4, gyrB-1, parC-2, qnrB-1 | acrR-1, envR-15, fis-1, marA-2, marR-1, oqxR-4, rob-21, sdiA-6, soxR-2, soxS-4 | |
| Virulence Factors | ||||||
| Gene alleles | type-3 fimbriae, biofilm formation, host cell adherence/capsule | yersiniabactin receptor | aerobactin/regulator system | yersiniabactin system | microcin E492 system components | |
| Gene alleles | mrkA-4, mrkB-1, mrkF-38, rkH-15, mrkI-18,mrkJ-1/wzi-143, wzc-937 | fyuA | irp1-148, irp2-145/kvgA-2 | ybtA-1, ybtA-39, ybtE-69, ybtP-4, ybtQ-60, ybtS-6, ybtT-39, ybtU-2, ybtX-62 | mceA-1, mceC-1, mceD-3, mceE-2, mceH-5 | |